Family alignment for the VHS domain, displayed in

                      cov    pid   1 [        .         .         .         .         :         .         .         . 80 
 1 JC4916/1-139    100.0% 100.0%     FDQDVEKATSEMNTA--EDWGLILDICDKVGQS-RTGPKDCLR---------------SIMRRVNH---KDPHVAMQALT    
 2 S45129/1-145    100.0%  29.9%     LDALIEQATSESIPNGDLDLPIALEISDVLRSR-RVNPKDSMR---------------CIKKRILNT-ADNPNTQLSSWK    
 3 YHQ8_YEAST/1-14 100.0%  24.1%     PLLRKIQRACRMSLAE-PDLALNLDIADYINEKQGAAPRDAAI---------------ALAKLINN---RESHVAIFALS    
 4 e316128/1-147   100.0%  26.2%     RLYSLIQNATEPYAFE-PDLAVNLDIADLINQTGGNLPREAAF---------------AIVRKVND---RNPTVAYLALN    
 5 YD85_SCHPO/1-14 100.0%  21.3%     TLSKYIDKATDQFNLE-PNLALNIEIADLINEKKGNTPREAAL---------------LILKRVNS---ANPTVSYLALH    
 6 e1301590/1-144  100.0%  36.0%     VGQRIEKATDGSLQS--EDWALNMEICDIINET-EEGPKDALR---------------AVKKRIVG--NKNFHEVMLALT    
 7 1109872/1-146   100.0%  31.2%     VGRKIELATDANLLAT-ENWGLNMEICDFINGT-EDGPRDAVR---------------ALKKRLHNAMSKNNAVVMYTLT    
 8 e1317756/1-144  100.0%  22.1%     VGHLIEKATFAGVQT--EDWGQFMHICDIINTT-QDAPKDAVK---------------ALKKRISK--NYNHKEIQLTLS    
 9 d1009386/1-139  100.0%  33.3%     FERLLDKATSQLLLE--TDWESILQICDLIRQG-DTQAKYAVN---------------SIKKKVND---KNPHVALYALE    
10 1326382/1-140   100.0%  27.3%     FQRVLDQATDSTLVE--PNWEGIILCTDMIRSG-EVPAKPSLQ---------------AIRKRMQH---ENPHVVNHTLL    
11 3395431/1-140   100.0%  27.1%     ATVAVDKATSDLLLG--PDWTTNMEICDSVNSL-HWQAKDVVK---------------AVKKRLQH---KSSRVQLLALT    
12 e1287273/1-154  100.0%  24.8%     VNAMVERATSEMLIG--PDWAMNLEICDMLNSDPAYVSLCSLRFCFCCYLSLSLYLFERERERVNS---KMEIKFRFFTR    
13 e339904/1-147   100.0%  31.4%     FASDIEKATSETLPAGSEEISLYLEISDQIRSK-SVDPKFAMR---------------ILKSRIDH---SNPNVQIMALK    
14 1943842/1-135    99.2%  32.3%     YEDLLGKITAPTITV--ENWEGILAFCDMINND-FEGSKTGIK---------------SLRKRLNN---RDPHVVLLAIS    
15 e1331630/1-142  100.0%  25.4%     IETLILQATDEKNTK--EKWDVIMDACDQLSSTSGDVGRNSIK---------------FLNKRLDT---ANANIQLLALT    
16 YHA2_YEAST/1-14 100.0%  22.4%     IRNALLKATDPKLRS--DNWQYILDVCDLVKEDPEDNGQEVMS---------------LIEKRLEQ---QDANVILRTLS    
17 2576347/1-145    97.7%  27.0%     LELWLNKATDPSMSE--QDWSAIQNFCEQVNTD-PNGPTHAPW---------------LLAHKIQS---PQEKEALYALT    
18 d1010574/1-146   98.5%  19.0%     LESWLNKATNPSNRQ--EDWEYIIGFCDQINKE-LEGPQIAVR---------------LLAHKIQS---PQEWEALQALT    
19 e1349955/1-146  100.0%  17.4%     IDYWVCRATDRFIGD--EERIKALDFIIESIYKQPASALLAVD---------------LFSHKLSS---PSQEEAMLTIR    
20 e325255/1-141   100.0%  18.0%     VTTYIDRLTSRDTDD--EDLSGIVQLSEAVNLT-VTGPREASR---------------TLRKKLKY---STPHEQVRALV    
21 2062175/1-149    99.2%  16.8%     RSRMIDAVTSDEDKV--APVYKLEEICDLLRSSHVSIVKEFSE---------------FILKRLDN---KSPIVKQKALR    
   consensus/100%                    ....h...s..........h.....h...........s.......................phh..............h.    
   consensus/90%                     h...l.phss........ph.h.hths-.lptt....sp.s..................l.++lpp....p......slp    
   consensus/80%                     ht.hl.psTst...t...shth.hphsD.lppp...ssp.uhp...............hlt++lpp...ts.p..hhsLp    
   consensus/70%                     htthlppATst.h.t...chth.hclsDhlppp.tsss+puhp...............hlt++lpp...pssphhhhuLp    

                      cov    pid  81          .         1         .         .         .         .         :         . 160
 1 JC4916/1-139    100.0% 100.0%     LLGACVSNCGKIFHLEVCSRDFAS-EVSNVL-NKGHPK-----VCEKLKALMVEWTDEF----KNDPQLSLISAMIKNLK    
 2 S45129/1-145    100.0%  29.9%     LTNICVKNGGTPFIKEICSREFMD-TMEHVILREDSNEE----LSELVKTILYELYVAF----KNDSQLNYVAKVYDKLI    
 3 YHQ8_YEAST/1-14 100.0%  24.1%     LLDVLVKNCGYPFHLQISRKEFLN-ELVKRFPGHPPLRYSK--IQRLILTAIEEWYQTICKHSSYKNDMGYIRDMHRLLK    
 4 e316128/1-147   100.0%  26.2%     LLDICVKNCGYAFRLQIASKEFLN-ELVRRFPERPPSRLNK--IQVMILSLIEEWRKTICRVDRYKEDLGFIRDMHRLLS    
 5 YD85_SCHPO/1-14 100.0%  21.3%     LLDICVKNCGYPFHFQIASEEFLN-GFVSRFPNHPISRMNK--IQSKMLEMLEEWNYMLCKNNRHREDFSRIHDIRELMA    
 6 e1301590/1-144  100.0%  36.0%     VLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTI---VHDKVLNLIQSWADAF----RSSPDLTGVVTIYEDLR    
 7 1109872/1-146   100.0%  31.2%     VLETAVKNCNHHFHVLVCNKDFVQ-DLIKLIGPKFDAPQI---IQERVLSLIQAWADAF----RGDPTLAGVVQSYDDLK    
 8 e1317756/1-144  100.0%  22.1%     LIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLD---IQNRILNFIKTWSQGF----PGGVDVSEVKEVYLDLV    
 9 d1009386/1-139  100.0%  33.3%     VMESVVKNCGQTVHDEVANKQTME-ELKELLKRQVEVN-----VRNKILYLIQAWAHAF----RNEPKYKVVQDTYQIMK    
10 1326382/1-140   100.0%  27.3%     VLDACVKNCGHKVHAEVATREFME-DFKNLVTENKYDE-----VKNKSLEMLQCWATAF----ANKPEYKMVVDTHNLMK    
11 3395431/1-140   100.0%  27.1%     LLETLVKNCGDYLHHQVAEKNILG-EMVKIVKKKADMQ-----VRDKILVMVDSWQQAF---GGPEGKYPQYYWAYDELR    
12 e1287273/1-154  100.0%  24.8%     LLETIVKNCGDMVHMHVAEKGVIH-EMVRIVKKKPDFH-----VKEKILVLIDTWQEAF---GGPRARYPQYYAGYQELL    
13 e339904/1-147   100.0%  31.4%     LTDTCVKNGGSGFLLEIASREFMD-NLVSILRSPAGIDED---VKMVILRYIQSWALAV---PDTNSPLSYIIHVYQNLK    
14 1943842/1-135    99.2%  32.3%     VLDSCWANCEERFRKEVSSAQFIN-ELKALCTSSQRQ------VAEKMRLTVQKWVDTE---CKTEQSLSLIVTLHKNLV    
15 e1331630/1-142  100.0%  25.4%     LTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNR-----VRSRIAVLVNEWAEIM----KKDPNMSLMQDICEKIR    
16 YHA2_YEAST/1-14 100.0%  22.4%     LTVSLAENCGSRLRQEISSKNFTS-LLYALIESHSVHIT----LKKAVTDVVKQLSDSF----KDDPSLRAMGDLYDKIK    
17 2576347/1-145    97.7%  27.0%     VLEMCMNHCGEKFHSEVAKFRFLN-ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF-------PEDIKIRDAYQMLK    
18 d1010574/1-146   98.5%  19.0%     YLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYH-------MLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFDDEE    
19 e1349955/1-146  100.0%  17.4%     ALDYLVRNGGEKVHERCGRYKFLN-ELVRLIAPKYNGKLTSDALKTEIIKLLFIWQLSI----KHIPKYKQVYESLKLSK    
20 e325255/1-141   100.0%  18.0%     ILQALIENAGSHFLQNFSDEKLEDRMLQCATNSEYSKP-----VRKRAIHMIKLWHNDY----SNVRGMESMSSLVSRLP    
21 2062175/1-149    99.2%  16.8%     LIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKG--DALNKAVRETAHETISAI-----FSEENGTKPAAPESIN    
   consensus/100%                    hh..hhtpt...h...h....h.......h.............h....h.h....................h........    
   consensus/90%                     lht.hhppss..hh..hsptphht..h.thh..t.........lpthhh.hh.th...h........t...h.thhp.h.    
   consensus/80%                     lhphhVpNsGp.hh.plsppphhp..hhphh..p.........lppthh.hlppW..sh....t.p.pht.h.thhp.hh    
   consensus/70%                     ll-hhVcNCGpth+hplupcpFhs.plhphhtpp.........lppclhthlppWtpsh....t.psphthhhshap.lp    

                      cov    pid 161   ] 163
 1 JC4916/1-139    100.0% 100.0%     EQG    
 2 S45129/1-145    100.0%  29.9%     SRG    
 3 YHQ8_YEAST/1-14 100.0%  24.1%     YKG    
 4 e316128/1-147   100.0%  26.2%     YKG    
 5 YD85_SCHPO/1-14 100.0%  21.3%     FRG    
 6 e1301590/1-144  100.0%  36.0%     RKG    
 7 1109872/1-146   100.0%  31.2%     SKG    
 8 e1317756/1-144  100.0%  22.1%     KKG    
 9 d1009386/1-139  100.0%  33.3%     VEG    
10 1326382/1-140   100.0%  27.3%     LAG    
11 3395431/1-140   100.0%  27.1%     RSG    
12 e1287273/1-154  100.0%  24.8%     KIF    
13 e339904/1-147   100.0%  31.4%     DGD    
14 1943842/1-135    99.2%  32.3%     ADG    
15 e1331630/1-142  100.0%  25.4%     KLD    
16 YHA2_YEAST/1-14 100.0%  22.4%     RKA    
17 2576347/1-145    97.7%  27.0%     KQG    
18 d1010574/1-146   98.5%  19.0%     KSK    
19 e1349955/1-146  100.0%  17.4%     IIT    
20 e325255/1-141   100.0%  18.0%     QRQ    
21 2062175/1-149    99.2%  16.8%     RRI    
   consensus/100%                    ...    
   consensus/90%                     ..t    
   consensus/80%                     .ts    
   consensus/70%                     tps