Family alignment for the Viral_Rep domain, displayed in

                     cov    pid  1 [        .         .         .         .         :         .         .         . 80 
1 REP6_SCSVF/6-86 100.0% 100.0%    STSWVFTLNFEGE-----IPILPFNESVQYACWQHERV--GHDHLQGFIQFKSRNTTLRQAKYIFNGLNPHLEIAR-DVE    
2 REP2_SCSVF/2-88  97.5%  30.3%    ARRYCFTLNYATEIERETFLSLFSQDELNYFVVGDETATTGQKHLQGFVSFKNK-IRLGGLKKKFGN-RAHWEIARGSDS    
3 MREP_SCSVF/5-83  93.8%  38.1%    VICWCFTLNNP-------LAPLSLHESMKYLVYQTEAGDNGTIHYQGYVEMKKR-TSLVQMKKLLPG--AHLEKRRGSQG    
4 MREP_BBTVA/6-83  92.6%  32.5%    -VCWMFTINNPTT-------LPVMRDEIKYMVYQVERGQEGTRHVQGYVEMKRR-SSLKQMRGFFPG--AHLEKRKGSQE    
  consensus/100%                   .hpahFTlN...............p-phpYhsht.Ets..Gp.HhQGalphKp+..pLhth+hhhss..sHhEht+.s.t    
  consensus/90%                    .hpahFTlN...............p-phpYhsht.Ets..Gp.HhQGalphKp+..pLhth+hhhss..sHhEht+.s.t    
  consensus/80%                    .hpahFTlN...............p-phpYhsht.Ets..Gp.HhQGalphKp+..pLhth+hhhss..sHhEht+.s.t    
  consensus/70%                    shsWsFTLN.ssp.....h..Lshp-plpYhVaQsEpuppGpcHlQGaVphKpR.ooLtQhKthFsG..AHLEhtRGSpp    

                     cov    pid 81         ] 89 
1 REP6_SCSVF/6-86 100.0% 100.0%    KAQLYAMKE    
2 REP2_SCSVF/2-88  97.5%  30.3%    QNRDYCCKE    
3 MREP_SCSVF/5-83  93.8%  38.1%    EARAYAMKE    
4 MREP_BBTVA/6-83  92.6%  32.5%    EARSYCMKE    
  consensus/100%                   psp.YshKE    
  consensus/90%                    psp.YshKE    
  consensus/80%                    psp.YshKE    
  consensus/70%                    cARsYsMKE