cov pid 1 [ . . . . : . . . 80 1 Q9RUL2 100.0% 100.0% LTSFSLPAPGRAAVAGVRLELNVDNPNPLPVRLVQLAGVLVLDG-QEAG-TVTVPD-IRLPGQGRARQVAQLTLPVTFKT 2 AHAA20037_2.y1 98.0% 11.9% NVGSVKVSKLSFTKIDLEVQIDIDNPNSFDLNFDNLNYNFALNG-IKAI-SGKSESTINVLKKSGSKLTLPISL-NLFEL 3 AHAA20037.y1.g 85.9% 17.2% -------------DIELTFDMEVDNPNPVTVALSQYDYDLQLNS-QSLV-KGSKPTNSSVEASGKSIVQIPVSF-GFKDL 4 rXZS45823_g2_g 96.0% 24.5% --VSIRATAVSPERLKLAVELDVHNPNSFPLAVQNVTGMLSLDNGATLG-AASAEPRTALPSQANTAVTLDLEV-PWQNL 5 r16567_g2 87.9% 23.3% -----------LDGVTLGLHWSVDNPNGFPFRLSRFGWALELDG-RQAA-RGDTTKAIEVPAEGAAKVAIPVRL-RWADL 6 Q9I705 99.0% 19.2% DLVGLEPLPGQGMEMRFMVKLRVQNPNDEPIEYNGIALDLDVNG-QPLA-SGVSDQTGEVPRFGERVVSVPLTV-SAFSA 7 Q936Z9 99.0% 20.2% DLVGLETLPGQGLEVRFAVKLRVQNPNDSAVSFNGMALDLDVNG-QPLA-SGVSDQSGSVPRFGETVLSVPVSI-SAFSV 8 Q880J2 99.0% 16.3% NVVGIEPIPGQGLELRMAVTLRVQNPNETEINYNGVALDLDVNG-KLLA-SGVSNQKGTVGRFSEAVLVVPVSV-SAFAA 9 Q88KU8 99.0% 18.3% SVIGIEPLPGQELELRMAVKMRVQNPNEAPIDYNGIALNLEVNG-QPLA-TGVSDQQGHIGRYDEAVIVVPVSI-TAFSF 10 EAI82994 99.0% 20.2% TVAGLDPLVGQGLEMRFSLKLRVQNPNDAPIDYDGISVALDLNG-TPFA-SGVSDRSGTVPRFGEAVLDVPVSV-SAFAA 11 ZP_00026059 99.0% 19.2% AVAGVEPIPGEGLEMRFNVKLRIQNPNDAPIEYNGVSLELDLNG-QSFA-SGVSDQSGTVPRFGETVIDVPLTV-PAFSA 12 ZP_00066534 98.0% 14.6% VTRLAPASSGSSLGTLFEIDLKIANPNGVALPIKGMSYSLAING-AELL-FGTSNQIPTIPAYGSETVTLQVEA-NLLSA 13 Q9I4T9 99.0% 12.6% KLLKVEVVKARLLEQEFVMRFRIDNPNDFSLPVRGLQYAVQLND-IQLA-EGESGQWFTVPAHGHEVFDVPVRT-NLWRH 14 ZP_00088857 99.0% 13.5% ELTQVEISKAGLLEQDFVLHFRISNPNESKLPVRGLAYKVHLED-IELVNDGESRQSFTVPAHGHQEFEVPVTT-NLWRR 15 DRPD_CRAPL 99.0% 12.9% SVEDVDLKDVGRHGITYLTRICVENPYSASIPVGEIKYTLKSAG-RVIV-SGNIPDPGSLKGNDKTMLEPAIKV-PHSAL 16 P93220 99.0% 14.9% DITDFDLKKVSMDSISYHAKVAVKNPYSVPVPIMQISYTLKCSG-RVIV-SGTIPDPGNIKANDTTILDVPVKV-PHSML 17 Q8LC67 99.0% 14.9% TVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSAT-RTIA-SGTIPDPGSLVGSGTTVLDVPVKV-AYSIA 18 Q8LCW6 99.0% 22.8% DVSAIHIPKINLERADIVVDVLVKNPNPVPIPLIDVNYLVESDG-RKLV-SGLIPDAGTLKAHGEETVKIPLTL-IYDDI 19 Q8LCW6_2 99.0% 16.0% DIEKIKFQKFSLEETVAILHVRLQNMNDFDLGLNDLDCEVWLCD-VSIG-KAEIADSIKLDKNGSGLINVPMTF-RPKDF 20 O58536 97.0% 15.8% SVSSMKIQIGGLVNSSLVVTLKIYNPNPTPITITGIEYALYCDDGVMIS-KENITKSIVIPGESVEYLDLVVKM--RYGT 21 Q9V273 100.0% 13.9% EGIYARWGKVSTKEIELVGTIKLYNPNSFPIPVTNLKADMYMNN-IKIG-EGRTLKGTILQPNSRGTVDVALTFDVEKLK 22 O57955 100.0% 16.8% EGMDAKWGRVSNDSIEIIGWLKLYNPNSFPIPVTGLSADLYMNS-VNIG-KGVILKGTVLQPNSRGEVKVKLVLDVDNFK 23 O29802 93.9% 12.5% -----KWGKVTESTTEIITTVKVYNPNPFPLPLKDILTEVYING-IKMG-EGSAL-SAHIEPNSESTVIITTYVDNSKIP 24 Q8U4F7 100.0% 15.8% EGIDARWGEVTQEKITIIAKIKLYNPNDFLIVVDNLEGYIYVNG-FEFG-YARIIEGATIRGKSRGEVVVEITTDEIKLY 25 O29803 100.0% 10.9% ESVKAMWGVVTDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNG-VKVA-DGYENSPVTVKPKSKTTLKFSLRLNNSFIR 26 Q9V273_2 98.0% 15.8% PTVRGEWGPMEGNNVEIIFHVDLGNPSPIPVAVQSLN--LSLAG-VEIG-RIEQAKIGIFERSTNVVAVVNLDKIAEALV 27 O57955_2 91.9% 13.1% --ISGEWGAVKGDNIELLLNVDLSNPSPAPILLETIK--VKLAG-VKIG----ETKRANIAIFSRK-VTIDSIINLDNLT 28 Q8U4F7_2 87.9% 16.8% ------WGEKGRAKGSIFVNINLGNPSPIPIKVENLK--IRVND-ITVG-SAENFGIGFL----REKLVGNLTIDFWNLT 29 Q9M287 98.0% 12.9% DLTSLKL-NLPVLDAELMLTVHVTNPNIAAIHYSSTKMTILYDG-TVLG-SAEV-KAGSQPARSCQLLRLPARLDGMELA 30 Q6YZI9 99.0% 20.8% SLSTFHFRPPAALDIGLTLTVHATNPNVVPVRYGPSTVSILYDG-AHLG-TARL-DAGEQPPTSCRLLHLPARLDAVELA 31 Q74AI1 96.0% 11.8% KDVAVTGFGADGVDIELLLG--VTNENSFALSLTGYSYDLQVLA-LPLTTGGDRRRI-EFPGGATTDVRLPFRVPFRSVM consensus/100% ................h.h...h.N.....h.h......h...s...h.........................h...... consensus/90% .........ht..thth.hphpl.NPs..sl.htthth.l.hss...hs.ts...p.h.h...spt.h.h.hph.....h consensus/80% ....hp...ht..phphhhphpltNPsshsl.hpshth.l.hss.h.hs.pu...p.hpl...upthl.lslph.....h consensus/70% th.thchh.sph.phphhhplclpNPNshslslpslphtlthsu.h.lu.pu...p.spl.ttupthlplslpl.sh..h cov pid 81 . 1 ] 106 1 Q9RUL2 100.0% 100.0% ATTFLNIARG---QEVSYRLD-GTLT 2 AHAA20037_2.y1 98.0% 11.9% GTEVRKALVD----GKPFQYSITGNA 3 AHAA20037.y1.g 85.9% 17.2% YNIASSLKDQ---DETDFDFA-ANAE 4 rXZS45823_g2_g 96.0% 24.5% AALAPFALAG---TDVPYRFD-GTA- 5 r16567_g2 87.9% 23.3% PGLVQVAMRR---DELPFKVSGVAAV 6 Q9I705 99.0% 19.2% FRQAWGLSNNAPTQGMPYVVKGKLAG 7 Q936Z9 99.0% 20.2% VRQAWGAAGYQPGQEVPYVLRGKLAD 8 Q880J2 99.0% 16.3% LRQALGLTQSQRLDNLPYTLRGKLAA 9 Q88KU8 99.0% 18.3% LRQAYGLGKLDSLQGLPYKLRGKLAG 10 EAI82994 99.0% 20.2% ARQAWNLPGAAASGELPYALRGRLAG 11 ZP_00026059 99.0% 19.2% VRQAFAFAGGVSSGNIPYEVRGRLAG 12 ZP_00066534 98.0% 14.6% PKLFLALNKSK-TLDYTFKTKIDL-S 13 Q9I4T9 99.0% 12.6% MKYIVKLLERP-EEPIRYRLQGEVKT 14 ZP_00088857 99.0% 13.5% MKPLVKLLKKA-EEPISYQVSGEVKT 15 DRPD_CRAPL 99.0% 12.9% VSLIKDIGAD---MDIDYVLELGLVV 16 P93220 99.0% 14.9% VSLGKDIGKD---WDIDYKLELGLAI 17 Q8LC67 99.0% 14.9% VSLMKDMCTD---WDIDYQLDIGLTF 18 Q8LCW6 99.0% 22.8% KSTYNDINPG---MIIPYRIKVDLIV 19 Q8LCW6_2 99.0% 16.0% GSALWDMIRG---KGTGYTIK-GNID 20 O58536 97.0% 15.8% LKAIWGELEA---TDRINWYLKGKL- 21 Q9V273 100.0% 13.9% EAFKEHIRNG---ERSTVKVDIELVV 22 O57955 100.0% 16.8% EAFKTHITNG---ERSTIRADINLVV 23 O29802 93.9% 12.5% QWWRSHITNG---EESTVSIRGYMVF 24 Q8U4F7 100.0% 15.8% NAIVSHIENG---CVSDVKLDIKFHI 25 O29803 100.0% 10.9% EWWVTHIANG---EKTKIRVAIKPTI 26 Q9V273_2 98.0% 15.8% NHIKDKENSI---AEINANIKVLGFI 27 O57955_2 91.9% 13.1% TALINHIKEK---EESTVSVYAKLEL 28 Q8U4F7_2 87.9% 16.8% DALISHIENN---ERSIVELSANIKL 29 Q9M287 98.0% 12.9% QHARQFFSDV---ANREMKLEAKLTI 30 Q6YZI9 99.0% 20.8% HHARSILADT---ARRHMELDAAVKI 31 Q74AI1 96.0% 11.8% EILKRHPDPA---A-IPYRLTGSLEV consensus/100% ...h...............h...... consensus/90% .t.h..h.t........h.ht.th.. consensus/80% .t.h.th.tt...tthshplphthhh consensus/70% .thh.thtps...tphshplphthhh