cov pid 1 [ . . . . : . . . 80 1 2648041/1-241 100.0% 100.0% ECGPT-SITVNFNTRNPFEG-HVYVKGLFD-----QAGCRS----DEHGRQVAGIELPFD--SCNVARTD--AEPKGVFV 2 CEF53F1_2/1-24 99.6% 46.4% ECDSR-TISVQIKTEKPFVG-VIFVKDFAS-----EEVCTS----RGTGRLSAFLEIEIG--LCGALRQR-VLNPKGLAV 3 CEE04D5_2/1-24 98.8% 43.3% VCETA-SISLLFKTRNSFNG-KVFVKGYVS-----EPSCMT----VGDGKTGHRFEVRHD--SCGVRRQR---EINGVVI 4 1322386/1-283 97.1% 9.7% QCIRDGQFVVVVARDVTLPR--LSLDSVRLLGGN-DPPCAP----VASTPSFAIYQFPVT--ACGTSVM---EDSGYVVY 5 SSAJ664_1/1-28 96.3% 10.5% QCTKDGQFVVVVSRDATLPN--LELDSISLLGAN-GAHCTP----VGTTSAFAIYQFKVT--ECGTVVT---EEPDTIVY 6 OLD609_1/1-283 97.1% 11.7% QCTKDGHFIVVVAKDVTLPH--IDLETISLLGQ--GQDCGP----ADSNSAFAIYYFPVT--YCGTVVM---EEPGVIVY 7 FC05777_1/1-27 97.5% 12.9% RCTQDGHFSIAVSRNVTSPP--LLLNSLRLAFGK-DRECNP----VKATRAFALFFFPFN--SCGTTRW---VTGDQAVY 8 MMONPEL4_1/1-2 97.1% 11.5% QCFKSGYFTLVMSQETALTHG-VLLDNVHLAYA--PNGCPP----TQKTSAFVVFHVPLT--LCGTAIQ---VVGEQLIY 9 XL44950_1/1-27 97.1% 11.0% QCTTDSNMLVAISKDLTKPS--LSLNSISVVGVD-QTSCPSL--SVSKTNAFIMFQFPL---SCGATKR---MDGNIITY 10 AB000929_1/1-2 96.3% 9.9% LCTRDGFMDFEVYSHQTKPA--LNLESLLVG----NSSCQPI--FKVQSLGLARFHIPLN--GCGTRQK---FEGDKVIY 11 AF079525_1/1-2 96.7% 9.8% TCTSDGFMDFEVYSHQTKPA--LNLDTLQVR----DTACQPA--FKNPSQDMVRFHIPLN--GCGTRAK---FEGGQAIY 12 AF038151_1/1-2 97.1% 7.7% FQHAHWMVTWTLKSFQLYKPE-LNLTTVKLR----DGACQP----SQITNNFLRFHVPLN--GCGTTVK---IVGTKVFY 13 GP2_RAT/1-253 95.9% 10.6% DCGAN-EIKVKLDKCLLGGLGFKEDIITYLN----DRNCRGT--MKDEPNNWVSTTSPVVANDCGNILE---NNGTQAIY 14 2/1-252 95.4% 11.8% ECGAN-DMKVSLGKCQLKSLG-FDKVFMYLS----DSRCSGF--NDRDNRDWVSVVTPARDGPCGTVLT---RNETHATY 15 1915909/1-255 95.9% 12.5% TCKAA-QMEVSISKCKLFQLG-FEREGVRIN----DRQCSG-----IEGEDFISFQINNTKGNCGNIVQ---SNGTHIMY 16 MM37438_1/1-24 93.4% 9.8% LCQSN-HMQASVSRSYLQSMG-YSARDLVIPGWNSSYHCQP-----QITQREVIFTIPYT--GCGTIKQ---ADNETINY 17 AF022147_1/1-2 93.4% 12.7% SCASD-KMRVIISKSYLQSLN-YHESNLQLN----DPTCRP------SVSNVVEFSIPLH--ECGTIKK---IEDHTISY 18 3387820/1-272 90.9% 9.7% KCDNE-KMVVAVDKDSFQTNG-YSGMELTLL----DPSCKA-----KMNGTHFVLESPLN--GCGTRHRR--SAPDGVVY 19 GGTGFBA_1/1-28 91.3% 9.6% KCDDK-VMTVAVEKDSLQASG-YTRTELSLL----DHSCKA-----RMNGTHFILESLPN--KCGTRTS---YILDKIVY 20 ZP3_RABIT/1-25 97.5% 10.6% ECLEA-RLVVTVSRDLFGTGKLIQEADLSLG----PEGCEP----QASTDAVVRFEVGLH--ECGNSVQ---VTDDSLVY 21 3060951/1-260 97.9% 10.9% QCQEA-QLVVTVHRDLFGTGRLINAADLTLG----PAACKHS--SLNAAHNTLTFAAGLH--ECGSVVQ---VTPDTLIY 22 AF079524_1/1-2 97.9% 10.9% QCEDD-RLVVSVNRDFFGTGRLVQAAELTLG----PSACAPV--PAEPLSKRVVFEVGLH--ECGSELQ---MTPDSLIY 23 1483163/1-258 97.9% 10.3% RCDED-KMVVTVQTDLYGIGKMVKASELTLG----PQRCSP---SPQSTSTAVLFQVALQ--DCGNSLQ---MTPNFLVY 24 CCZP3B_1/1-257 97.1% 11.7% QCGEN-RIHVEVQQDLFSNGQLIQPSGLTLG------RCPVV--GLVPGSKVLFFENELQ--DCNSVLM---MTKDELVY 25 1729787/1-257 97.1% 9.1% ECRER-DAVVEVKKDMFGIGQFINPADLTLG------NCAAV--GEDNNAHVLILQAELH--QCGSTLT---TTDKSLIY 26 CEM142_1/1-247 98.3% 39.5% ICGPD-RIGVKASTKQPFEG-NVFVMDHYH-----DEECRAG-PEKFPDSRSIGLTVPFS--ACNVHRYR-SLNPKGIFV 27 CEW01A8_4/1-23 97.1% 30.0% ICAEN-DLALDIVTSKPFRG-NIFVKGRAK-----DKSCRQ----SYANNGTNSYSLPLG--KCGMQRLR-SANPRGVNF 28 ZK265.8/1-253 97.5% 26.6% ECLED-EIRIWVKTRKIFAG-RIYAKGRAE-----LEDCYKD-DFGNQKTRKPHFDLQFG--ACGMKSLR-SVDPRGMYY 29 CET04F8_4/1-24 95.4% 31.0% QCNAD-TIDMQFRTRKQFNG-KVYVKGSYN-----RPECRVD-YSTKDQFGRPVGGIKLNHGACNMDRQR-MIAPEGMMF 30 CEF53B6_1/1-24 96.7% 31.1% FCGID-TIRVKVNTEHPFNG-RIYVDGESD-----KQHCVQH--SADAHSSPQEFTIPIG--ACNMRRQR-TLHPRGISF 31 CET22C8_7/1-24 96.7% 31.2% ECGSE-GIRLHINPTGTFGG-HVYVRGFFP-----QTVCHLN-YCTRLTNRPIVMDLPFRG-PCNVRRRR-NVAPPSISY 32 W04C9.3/1-249 96.7% 23.0% QCNPE-SITFSFNTRNPFIG-NVYIRGFYR-----TPGCRRQ--FLAPNQAGGSFTVRLG--DCGMRRSR-QISGHSPRG 33 CEM28_7/1-245 96.3% 26.4% SSTRS-RPGSTLPLSTSSSP---DCPPLTTCA---PCACEER--RTRRATNSIRLEVPLN--SCNTKRDR-KLNPPSVVV 34 1086835/1-243 95.0% 26.7% ICEED-KIIIKIKTSMSNPSN-IYVDGREN-----DMECVS--------RNQNKIEVAHD--KCGVVNEK-TEQPNGSIR 35 XL44949_1/1-25 96.3% 8.2% KCDND-QMKITLLSSVLDELD-INASQLHMN----NPLCNMQ-NTSGLYLSIVLTHENHT--FCGTAVQ---VNGSHLIY 36 PM20652_1/1-23 91.7% 9.7% HCNSN-YMELLIPLSEISSRG-LSVYDIRLQ----DPSCHA-----TAYGQYARLYGPLN--GCGSRTET---SGDTIIY 37 CEK06A1_1/1-25 95.0% 25.9% SCHSG-FMSLKVNTEKSPPSH-VFVKGHFR-----KDGCSF--------SNTANATFEFS--KCDVMRQR-EANPKGMAY 38 CEY53C12B_1/1- 97.5% 27.2% RCAPT-GITIMLETDSPFKGA-LFLRGSAD-----KKSCKANFSAQ--PSQNISFEFGFD--DCPSRRKRQIVAPRGMTM 39 1314322/1-250 93.4% 10.5% QCSNT--MILSMPKCQMEKDR-YNSTNLHLV----DSACQLKDQIVD-DLAQMVYNWTLKNGECGNNLI---VNSTHVTY 40 XL41839_1/1-25 95.9% 11.9% TCLPN-IMVISVSQCLLTHLG-FDYTNMHLLNND-SDICNIHYPEIINNNRVESMQLKVQSGWCGNKMT---FDSSKLYY 41 GGTCTORIN_1/1- 93.4% 11.2% YCYPR-TIITKIPECPYGWE--VNQLALG-------GICYNGIHDSGYYQFTIPDLSPKNKSYCGTQSE---FKNPVYHF 42 let-653 93.8% 12.2% ECRDN-GISVSVKSRLPYTG-AIYGLYDF-------FTCRTEPKE-ATEFDHFFPYQTVSK-NCSDSIK---YKGNEMVL consensus/100% .p..t......h..........................C........................Cs..............h consensus/90% .C..t..h.h.h.pp.......h...th..........C...........t...h...ht...Cs..h.....tst.h.h consensus/80% .Ctts..h.l.ltpp.......h.htsh.........tCt.........tt.h.hph.hp..tCss.hp....pspthhh consensus/70% pCtps.phhltlppp..h.s..l.hpshth.....t.tCps.....t.spthhhhphshs..tCGsthp...hssptlha cov pid 81 . 1 . . . . : . 160 1 2648041/1-241 100.0% 100.0% STTVVIS------------------------------FHPQFVTKVDR-AYRVQCFYMEADKTVS------AQLEVSEIT 2 CEF53F1_2/1-24 99.6% 46.4% RTTITIS------------------------------FHPYFITKVDR-TYNLLCLYRESQVTVA------NNISVDEIS 3 CEE04D5_2/1-24 98.8% 43.3% SATVIIS------------------------------FHSIFITKIDR-AYRVSCFYVEGTKKVH------NHVDISALT 4 1322386/1-283 97.1% 9.7% ENRMTSSYEV-------------------------GIGPYGSITRDSHFEFLFQCRYSGTSVEA-------LVVEVNSIP 5 SSAJ664_1/1-28 96.3% 10.5% ENRMSSSYVV-------------------------GIGPFGDITRDSHYDLVFQCRYTGTSVET-------LVIEVKTYP 6 OLD609_1/1-283 97.1% 11.7% ENRMTSSYEV-------------------------GVGPLGAITRDSSFELLFQCRYRATSVET-------LVVEVQPPD 7 FC05777_1/1-27 97.5% 12.9% ENELVAARDV-------------------------RTWSHGSITRDSIFRLRVSCSYSVRSNAFP------LSVQVFTIP 8 MMONPEL4_1/1-2 97.1% 11.5% ENQLVSDIDV-------------------------QKGPQGSITRDSAFRLHVRCIFNASDFLP-------IQASIFSPQ 9 XL44950_1/1-27 97.1% 11.0% ESTVVSARDI-------------------------RTWRGSSITRDSTMKLTVRCIYGRTGIAPL------LRVEVYTLP 10 AB000929_1/1-2 96.3% 9.9% ENEIHALW---------------------------ENPPSNIIFRNSEFRMTVRCHYIRDSML--------LRAHIKSHS 11 AF079525_1/1-2 96.7% 9.8% ENEIHALW---------------------------ADLPPNKITRDSEFSLTVRCYYSGTDLM--------VRTNISSPP 12 AF038151_1/1-2 97.1% 7.7% ENEIHALW---------------------------KDFPPRRISRDSEFRQTIRCYYNTGGNAS-------VIVNVWTLP 13 GP2_RAT/1-253 95.9% 10.6% RNTLSLA--------------------------------TDFIIRDFLVNVNFQCAYPLDMNVS-------LQTALQPIV 14 2/1-252 95.4% 11.8% SNTLYLA--------------------------------DEIIIRDLNIKINFACSYPLDMKVS-------LKTALQPMV 15 1915909/1-255 95.9% 12.5% KNTIWIES---------------------------ANNTGNIITRDRTINVEFSCAYELDIKIS-------LDSVVKPML 16 MM37438_1/1-24 93.4% 9.8% SNFLRA------------------------------VVSNGIIKRRKDLNIHVSCKMLQNTWV--------NTMYITNN- 17 AF022147_1/1-2 93.4% 12.7% TNIITFT----------------------------QSPESAVITRKRHLQIVVTCEMEYNSTV--------EILYITEDD 18 3387820/1-272 90.9% 9.7% YNSIVVQAPSPGDSSGWPDGYEDLESGDNGFPGDTDEGETAPLSRAGV--VVFNCSLRQLR---------SPSGFQDQ-- 19 GGTGFBA_1/1-28 91.3% 9.6% FNSIVIQLSSPAEGSSFDD--DDMESGDNGFPGDADEGD-VTFSNWPE--IAFNCTLHQPEK-----DFFNPAMFWPPE- 20 ZP3_RABIT/1-25 97.5% 10.6% SSFLLHDP---------------------------RPAGNLSILRTNRAEVPIECRYPRQGNVS-------SRAILPTWV 21 3060951/1-260 97.9% 10.9% RTLINYDP---------------------------SPASNPVIIRTNPAVIPIECHYPRRENVS-------SNAIRPTWS 22 AF079524_1/1-2 97.9% 10.9% STVLHYAP---------------------------NLSQSPLVLRSSPVSVPIQCQYPRRDNVS-------SRGIQPTWV 23 1483163/1-258 97.9% 10.3% STNLTYA----------------------------PAPRNVPIIRMNGAKVLIQCFYPRNGNVS-------SKAIKPTWV 24 CCZP3B_1/1-257 97.1% 11.7% TFALTYTP---------------------------EAFAGTPIIRSDGAVIGVQCHYQRFHNVS-------SNALKPTWV 25 1729787/1-257 97.1% 9.1% TFLLNYNP---------------------------QPLGAAPVVRTSSAVVIVECHYQRHHNVS-------SLPLDPLWI 26 CEM142_1/1-247 98.3% 39.5% EVSIVFM------------------------------FHSLFMTKTDQT-VKVQCFYMEADKHVT------VPLSVSMIT 27 CEW01A8_4/1-23 97.1% 30.0% MVTVIVSF-----------------------------HPAGFITKNDRA-FHVKCFYMEPDEIVT------QNIDVSMIP 28 ZK265.8/1-253 97.5% 26.6% GITVVVS------------------------------FHPLFITKVDQA-YHVKCFFEEANKGLT------AELGVSMIP 29 CET04F8_4/1-24 95.4% 31.0% STVLIIS------------------------------FHPLFLTRMDKA-YHIRCMYKEAART------VTAAIDVSNLP 30 CEF53B6_1/1-24 96.7% 31.1% SFTMITS------------------------------FHPFFVTGMDRA-FSIRCFFLESIKG------LNAEIDVGTLA 31 CET22C8_7/1-24 96.7% 31.2% DVTVIIQ------------------------------HHPLFVTSFDKA-YRLNCIYRQQESTLQ------QRINVSDIP 32 W04C9.3/1-249 96.7% 23.0% VNQHITFV---------------------------ANFHPNLATKEERS-FNIRCFYAHSESVVK------ADLDVSSMP 33 CEM28_7/1-245 96.3% 26.4% SLIAVVS------------------------------FHDSFITKLDKA-YHIQCAYAEAEKTVS------TDLDVNMTD 34 1086835/1-243 95.0% 26.7% RLCIFVQ------------------------------LHPLFVTESDRS-YCAQCVYADSHVMKD----IESTLDISEAP 35 XL44949_1/1-25 96.3% 8.2% SNELTSGTSF----------------------VNQPVGPGSLITRSSDIRIHFSCVYKYDGVVS-------LPYPLLTSF 36 PM20652_1/1-23 91.7% 9.7% MNTAYG-------------------------------YVSPNGAKRLRV--PMFCYMGSSGRA---------MATFTPRV 37 CEK06A1_1/1-25 95.0% 25.9% TATVVVQ------------------------------LHPLFTTKVDRA-YKLRCFYKEAEKAVGAEVSRPFKANYNNNI 38 CEY53C12B_1/1- 97.5% 27.2% SSVLVVSY------------------------------HGSIITHRDVA-YQIDCFYREENSRVE------TMLSVNAPQ 39 1314322/1-250 93.4% 10.5% ANKLFVYA------------------------------QNTLITSRNNATLYFSCSYPLNMKTS-------LNFPLKTVF 40 XL41839_1/1-25 95.9% 11.9% KNSLYIGI-----------------------------QNKSVITVDPMT-LNFTCSYNMTMQTS-------LIYALKPVL 41 GGTCTORIN_1/1- 93.4% 11.2% YNSIVSN-------------------------------DSTVIVKSQPVNYSFTCTYNANYLV--------NQAAFDQRV 42 let-653 93.8% 12.2% EVVLSTD----------------------------GIEPLYFITPEDLT-YQAKCPISGVKAK--------DPANTKSSA consensus/100% ...h......................................h.........h.C.h....................... consensus/90% ...h......................................hhp.....h.hpC.h................h.h.... consensus/80% ps.lhht................................s..lh+.s.h.h.hpCha.ttt.h..........h.h.... consensus/70% psplhht..............................h.s.hlo+psph.hthpChY.tst.h.........th.ltshs cov pid 161 . . . 2 . . . . 240 1 2648041/1-241 100.0% 100.0% --------TQFQTQV---VPMPVCKYEILEG-----------------------------------AALGQPIQFAT--- 2 CEF53F1_2/1-24 99.6% 46.4% --------TISYNVN---LTMPTCTYQILSG-----------------------------------GPFGEPVEFG---- 3 CEE04D5_2/1-24 98.8% 43.3% --------TQLLESE---TQLPVCRYEILN------------------------------------EAGGSPIKYAR--- 4 1322386/1-283 97.1% 9.7% ---------PPPPVAA--PGPLRVELRLANGNVSPK------------------------AVLKGDEAYTSYYSDTDYP- 5 SSAJ664_1/1-28 96.3% 10.5% ---------NPNPVVTV-DAVLNVELRLANGRCLSK------------------------GCDEMQEAYTSYYTVADYP- 6 OLD609_1/1-283 97.1% 11.7% ---------SPLSIAE--LGPLNVYLQIANGQCQTK------------------------GCDEAAAAYTSFYTDADYP- 7 FC05777_1/1-27 97.5% 12.9% ---------PPHLKTQ--HGPLTLELKIAK-----------------------------------DKHYGSYYTIGDYP- 8 MMONPEL4_1/1-2 97.1% 11.5% ---------PPAPVTQ--SGPLRLELRIAT-----------------------------------DKTFSSYYQGSDYP- 9 XL44950_1/1-27 97.1% 11.0% ---------PPPPVST--PGPLMLEMRIAR-----------------------------------DMQYTTYYADGDYP- 10 AB000929_1/1-2 96.3% 9.9% ---------SPVASVK--PGPLALVLQTYP-----------------------------------DISYQRPYRKNEYP- 11 AF079525_1/1-2 96.7% 9.8% ---------PPIVSVK--PGPLSLVLQIYP-----------------------------------DESYLQPYRDDQYP- 12 AF038151_1/1-2 97.1% 7.7% ---------PPVSART--DGPLTLVLNVYP-----------------------------------DVSYGTAYSNNQYP- 13 GP2_RAT/1-253 95.9% 10.6% --------SSLNVDVG-GAGEFTVTMALFQ-----------------------------------DQSYTHPYEGSKV-- 14 2/1-252 95.4% 11.8% --------SALNIRVG-GTGMFTVRMALFQ-----------------------------------TPSYTQPYQGSSV-- 15 1915909/1-255 95.9% 12.5% --------SVINLTVPTQEGSFTTKMALYK-----------------------------------NASYKHPYRQGEV-- 16 MM37438_1/1-24 93.4% 9.8% --------TVEIQEVQ--YGNFDVNISFYT-----------------------------------SSSFLFPVTSSPY-- 17 AF022147_1/1-2 93.4% 12.7% --------VIQNQSV---LGKYNTSMALYE-----------------------------------SGSFENLIQESPY-- 18 3387820/1-272 90.9% 9.7% --------L---------DGNATFNMELYN-----------------------------------TDLFLVPSPGVF--- 19 GGTGFBA_1/1-28 91.3% 9.6% --------PH--------ITNVTFNMELYK-----------------------------------TDLFLAPSQGLF--- 20 ZP3_RABIT/1-25 97.5% 10.6% --------PFWTTVLS--EERLVFSLRLME------------------------------------ENWSREKMSP---- 21 3060951/1-260 97.9% 10.9% --------PFKLCPVS--RGEAVFSLRLMS------------------------------------DDWSTERPFT---- 22 AF079524_1/1-2 97.9% 10.9% --------PFHSTLSR--EQRLKFSLRLMA------------------------------------DDWSTERTSS---- 23 1483163/1-258 97.9% 10.3% --------PFSSTISA--EDRLAFSLRLMT------------------------------------DDWSSPRASN---- 24 CCZP3B_1/1-257 97.1% 11.7% --------PYASTAVG--EEVLLFSLKLMM------------------------------------DDWSYERPSN---- 25 1729787/1-257 97.1% 9.1% --------PFSEVKVS--EEFLYFTLKLMT------------------------------------DDWQYERPIY---- 26 CEM142_1/1-247 98.3% 39.5% --------TVFREQI---YQMPQCAYTLRK-----------------------------------GAPDGPIVRFA---- 27 CEW01A8_4/1-23 97.1% 30.0% --------TTELSDS---MVMPKCEYSVRR-----------------------------------DGPNGPTLTYAN--- 28 ZK265.8/1-253 97.5% 26.6% --------TTELEAR---HGIPGCTYSIHRST---------------------------------IDELDAGRPAGNVI- 29 CET04F8_4/1-24 95.4% 31.0% --------TESVQ---SDLPMPTCSYTIRR-----------------------------------DQLDGPILKYAK--- 30 CEF53B6_1/1-24 96.7% 31.1% --------PQHVDQ---EYSLPVCAYHLKD------------------------------------GIEGHVLRFA---- 31 CET22C8_7/1-24 96.7% 31.2% --------STALQSK----NAPKCRYDVLS-----------------------------------GSLNGPVVRFAN--- 32 W04C9.3/1-249 96.7% 23.0% --------EESFEQGV--TIVPQCTYSLRE-----------------------------------GTFEGPKVSNTR--- 33 CEM28_7/1-245 96.3% 26.4% --------EQEINGT---VEPPSCDYLI-------------------------------------SDQNGNSVQNS---- 34 1086835/1-243 95.0% 26.7% --------PLQLSPQFDAPVMPKCNYSIRK-----------------------------------QGKDGPPVQYAS--- 35 XL44949_1/1-25 96.3% 8.2% --------SSVTFVVK--EGIFNVTMTSYP-----------------------------------TSEFKQPYEWLP--- 36 PM20652_1/1-23 91.7% 9.7% --------QDEVSM-----GLFDLRVRFYMN-----------------------------------QFFHQPIYSYPY-- 37 CEK06A1_1/1-25 95.0% 25.9% ITIKCFSDPTPVQLED-ESPQPVCSYTIHK-----------------------------------ESPNGPIAKFA---- 38 CEY53C12B_1/1- 97.5% 27.2% --------PRILSDE---PKLPTCDYRVEVTG--------------------------------GKAVAGGIVTSSLSET 39 1314322/1-250 93.4% 10.5% G-------STEISVP-NGEGKLTVIMSVFT-----------------------------------DSAFSQHVTADS--- 40 XL41839_1/1-25 95.9% 11.9% S-------TVSISGP-NGTGSYALTMSAYN-----------------------------------NPDYTSPIQAED--- 41 GGTCTORIN_1/1- 93.4% 11.2% A-------TIHVKNGS--SGSFESQLSLNFYS---------------------------------NAKFSSIKEAPFVVE 42 let-653 93.8% 12.2% -------HLDNRNKA--MEASAHALFELLSKTGDDEALQNT-XX------HDGSTLAGKPKVPVIFDIFHNGQPVEAV-- consensus/100% .........................h...................................................... consensus/90% .......................h.hthh........................................t..h....... consensus/80% ...................t...hphplh.....................................t..t..ht.s.... consensus/70% ...................s..thphplhp....................................s.hst.hp.s.... cov pid 241 : . . . . 3 . . 320 1 2648041/1-241 100.0% 100.0% -----------------------------IAQQVYTSGTCDSET-----------------------IDTFCAVVHSCVV 2 CEF53F1_2/1-24 99.6% 46.4% ----------------------------LIGQQVYHQWKCDNDKGMI----------------ILIKEDSFCMVVHTCSV 3 CEE04D5_2/1-24 98.8% 43.3% -----------------------------IGDQVYHKWTCVAEL-----------------------ENVYCMKVHSCTV 4 1322386/1-283 97.1% 9.7% -------------------------VTKVLREPLYVEVRIIERT-----------------------DPNIALMLGHCWA 5 SSAJ664_1/1-28 96.3% 10.5% -------------------------VTKVLRDPVYAEVRILGMT-----------------------DPNVVLTLEQCWA 6 OLD609_1/1-283 97.1% 11.7% -------------------------VTKVLRDPVYVDVQILGRT-----------------------DPNLVLTLGRCWA 7 FC05777_1/1-27 97.5% 12.9% -------------------------VVKLLRDPIYVEVSIRHRT-----------------------DPSLGLLLHNCWA 8 MMONPEL4_1/1-2 97.1% 11.5% -------------------------LVRLLREPVYVEVRLLQRT-----------------------DPSLVLVLHQCWA 9 XL44950_1/1-27 97.1% 11.0% -------------------------VIKILRDPVFLEVRVLRRL-----------------------DPNLVLVLNQCWA 10 AB000929_1/1-2 96.3% 9.9% -------------------------LVRYLRQPIYMEVTVLNRN-----------------------DPNIKLVLDDCWA 11 AF079525_1/1-2 96.7% 9.8% -------------------------IVRYLRQPIYMEVQVVNRN-----------------------DPNIKLVLDDCWA 12 AF038151_1/1-2 97.1% 7.7% -------------------------VVKTLLDPIFLEVQVLNRN-----------------------DPNIELVLDDCWA 13 GP2_RAT/1-253 95.9% 10.6% --------------------------LLPVENILYVGALLNRGD-----------------------TSRFKLLLTNCYA 14 2/1-252 95.4% 11.8% --------------------------TLSTEAFLYVGTMLDGGD-----------------------LSRFALLMTNCYA 15 1915909/1-255 95.9% 12.5% --------------------------VLTTRDVLYVGVFVVGAD-----------------------STHLILTLNKCYA 16 MM37438_1/1-24 93.4% 9.8% --------------------------YVDLDQNLYLQAEILHS------------------------DASLALFVDTCVA 17 AF022147_1/1-2 93.4% 12.7% --------------------------YVDLNQTLFVQATLHTS------------------------DPSLVVFLDTCRA 18 3387820/1-272 90.9% 9.7% --------------------------SVAENEHVYVEVSVTKA------------------------DQDLGFAIQTCFI 19 GGTGFBA_1/1-28 91.3% 9.6% --------------------------SVAENGPIYVEVSVTKA------------------------DISLGFAIQTCFV 20 ZP3_RABIT/1-25 97.5% 10.6% --------------------------TFHLGDTAHLQAEVRTGS-----------------------HPPLLLFVDRCVA 21 3060951/1-260 97.9% 10.9% --------------------------GFQLGDILNIQAEVSTES-----------------------HVPLRLFVDSCVA 22 AF079524_1/1-2 97.9% 10.9% --------------------------AFQLGDLIHIQADVYTGY-----------------------HVPLRLFVDSCTA 23 1483163/1-258 97.9% 10.3% --------------------------LFQLGDIFHIEASINIAN-----------------------HAPMTIYADSCVA 24 CCZP3B_1/1-257 97.1% 11.7% --------------------------SYFLGDIINIEASVKVYN-----------------------HVPLRVFVDRCVA 25 1729787/1-257 97.1% 9.1% --------------------------QYFLGDIINIEASVKQFY-----------------------HVPLRVYLDNCVA 26 CEM142_1/1-247 98.3% 39.5% ----------------------------TLGESVYHRWECIEVEG--------------------ADKDTFGMLVHSCYV 27 CEW01A8_4/1-23 97.1% 30.0% -----------------------------VGDIVFHVWEC-T-------------------------PADMGMLVKKCFV 28 ZK265.8/1-253 97.5% 26.6% -------------------------QFARVGERVLHQWHCN--------------------------DQMYGVLINNCYV 29 CET04F8_4/1-24 95.4% 31.0% -----------------------------VGDQVVHRWQCD--------------------------SEDYGLLVHSCYV 30 CEF53B6_1/1-24 96.7% 31.1% ----------------------------QVGQKVTHVWRCDQDA-----------------------SHVYGILIHSCYA 31 CET22C8_7/1-24 96.7% 31.2% -----------------------------VGDVVVHKWTCD--------------------------SDRFGFVVHSCVV 32 W04C9.3/1-249 96.7% 23.0% -----------------------------VGMTIVHRWDCD-------------------------TSGNYGILLRGCTI 33 CEM28_7/1-245 96.3% 26.4% ----------------------------LVGELVRHQWVCKGGL-----------------------TNKLKMLVHQCYV 34 1086835/1-243 95.0% 26.7% -----------------------------IGDSVFHVWSCD--------------------------GNHNGILVQNCHV 35 XL44949_1/1-25 96.3% 8.2% --------------------------VIPLSQNLNVQLQVHEHD----------------------LDNYFSLRIEDCWA 36 PM20652_1/1-23 91.7% 9.7% --------------------------DVELGEPLYAEVAL------------------------TSAARDLQLFLETCKV 37 CEK06A1_1/1-25 95.0% 25.9% ----------------------------QLGDVLYHVWECP--------------------------SEAYQMEVYNCDV 38 CEY53C12B_1/1- 97.5% 27.2% A-----------------------SQIANVGDSVIHIWTCSGDAP----------------------SDVYCIQVYSCTA 39 1314322/1-250 93.4% 10.5% -------------------------------ELIVEQPLYVSVL--------------------MASLESFSVKVTNIYV 40 XL41839_1/1-25 95.9% 11.9% --------------------------TVEVGTYIYLGLFVKDAD-----------------------GAAFTLRVEECYA 41 GGTCTORIN_1/1- 93.4% 11.2% T--------------------------SEIGSDIFAGVEA------------------------KGLSDRFKVVLNNCWA 42 let-653 93.8% 12.2% ----------------------------VVGTKISLSFRP------------------------HYPIPPEYVDVRGCQV consensus/100% .................................h......................................h.h.th.h consensus/90% .............................htp.l.h.h.h..............................h.hhlppChs consensus/80% .............................ltp.lhhthph...........................ps.hthhlppChs consensus/70% .............................ltp.lhhphps.t.........................psshtlhlpsChs cov pid 321 . . : . . . . 4 400 1 2648041/1-241 100.0% 100.0% DDGN-----------------------GDTVQILNEGSCALD--KFLLNNLEYPT-----------------DLTAGQEA 2 CEF53F1_2/1-24 99.6% 46.4% DDGR-----------------------GETSFLIDSNGCSID--KFLLSNLEYPG-----------------NLLAGQEA 3 CEE04D5_2/1-24 98.8% 43.3% YDGQ----------------------GGPPVTVIDANGCSVDG--VILQNLEYTS-----------------DLTAGKLA 4 1322386/1-283 97.1% 9.7% TSTP-------------------SPLGLPQWDLLI-NGCPYQDDRYRTTLVPVTGSS----------GLQFPTHYKRFVV 5 SSAJ664_1/1-28 96.3% 10.5% TIDP-------------------TGDRLPRWDLLV-NGCPYQDDRYLT--VPIASDSSYIP------PGEFLSHYKRFVF 6 OLD609_1/1-283 97.1% 11.7% TTSP-------------------NAFSLPQWDILI-DGCPYADDRYLSALVPIDHSS----------GLPFPTHHSRFLF 7 FC05777_1/1-27 97.5% 12.9% TPGK-------------------NSQSLSQWPILV-KGCPYVGDNYQTQLIPVQKALD----------TPFPSYYKRFSI 8 MMONPEL4_1/1-2 97.1% 11.5% TPTT-------------------SPFEQPQWPILS-DGCPFKGDNYRTQVVAADREA-----------LPFWSHYQRFTI 9 XL44950_1/1-27 97.1% 11.0% TPST-------------------DSTAQPQWPILT-NGCPFPGDNYLTQMIPVGAASQ---------AVPFPSHYQRFSI 10 AB000929_1/1-2 96.3% 9.9% TTFE-------------------DPASVPQWQIIM-DGCEYELDNYRTTFHAANSSA------------AHSGHYQRFDV 11 AF079525_1/1-2 96.7% 9.8% TLSV-------------------DPMSLPRWNVIV-DGCDYTLDNYRTKFHHVGSSV------------NYPNHYQRFEV 12 AF038151_1/1-2 97.1% 7.7% TMTS-------------------NPNSTPQWNVVV-DGCQEEMDNLWTIFHPVGINV------------ARPSHRKRFEV 13 GP2_RAT/1-253 95.9% 10.6% TPSG-------------------DRNDIVKYFIIR-NRCPNQ----RDSTINVEENG--------------VSSESRFSV 14 2/1-252 95.4% 11.8% TPSS-------------------NATDPLKYFIIQ-DRCPHT----RDSTIQVVENG--------------ESSQGRFSV 15 1915909/1-255 95.9% 12.5% TPSR-------------------DSNDKLRYFIIE-GGCQNI----KDNTIGIEENG--------------VSLTCRFHV 16 MM37438_1/1-24 93.4% 9.8% SPHP-------------------NDFSSLTYDLIR-SGCVRD-----DTYQSYS---------------SPSPRVSRFKF 17 AF022147_1/1-2 93.4% 12.7% SPTS--------------------DFASPTYDLIS-SGCSRD-----ETCEVY----------------PLFGHYGRFQF 18 3387820/1-272 90.9% 9.7% SPYS-------------------NPDRMSDYTIIE-NICPKD-----DSVKFYSSKRV-----------HFPIPHAEVDK 19 GGTGFBA_1/1-28 91.3% 9.6% SPFS-------------------NPDRMSDYTIIE-NICPKD-----ESVKFYSTEKL-----------NFPIAHAQKDK 20 ZP3_RABIT/1-25 97.5% 10.6% TPTR-------------------DQSGSPYHTIVDLHGCLVDG--LSDGASKFKAP-------------RPKPDVLQFMV 21 3060951/1-260 97.9% 10.9% ALSP-------------------DGDSSPHYAIIDFNGCLVDG-RVDDTSSAFITP-------------RPREDVLRFRI 22 AF079524_1/1-2 97.9% 10.9% TLTP-------------------DPASVPYHVVIDFNGCLVDG-QSRDSSSIFISP-------------RPGQNVLRFLV 23 1483163/1-258 97.9% 10.3% TVTP-------------------DVNSNPRYEIINQNGCLVDG-KLDDSSSAFRSP-------------RPQPDKLQFSV 24 CCZP3B_1/1-257 97.1% 11.7% TQVP-------------------DVNALPRYLFIENHGCLVDA-KVTASSSRFMP--------------RSQEDKIRFQL 25 1729787/1-257 97.1% 9.1% TLSP-------------------DRSSNPNYAFIDNHGCLVDA-RLTGSDSKFMA--------------RTADNVLRFQL 26 CEM142_1/1-247 98.3% 39.5% DNGY-----------------------GDRVDILDSNGCGLD--AVLLSTPDYDT----------------SLRLATKPY 27 CEW01A8_4/1-23 97.1% 30.0% TDGD-----------------------GEDHAVVDFDGCATD--PFLLSELSYDA----------------SLMRAHASS 28 ZK265.8/1-253 97.5% 26.6% TDGF-----------------------GKKADVIDDKGCPID--PILITGIRYSS----------------DLQRAYAES 29 CET04F8_4/1-24 95.4% 31.0% EDGQ-----------------------GEKQMIIDERGCHTD--RLLLGDPTYVE----------------ALNMAYRES 30 CEF53B6_1/1-24 96.7% 31.1% DDGH-----------------------GNKFELVDDRGCSTD--PFLLPQIEYEH----------------GAISAYTNA 31 CET22C8_7/1-24 96.7% 31.2% RDES-----------------------GKDFQFIDERGCVTD--FSLFPEVSYSD----------------DLKSAFTAV 32 W04C9.3/1-249 96.7% 23.0% LDSR----------------------GVESFPLLDENGCSVS---RDFPQVVYLP----------------SLTSAYMAI 33 CEM28_7/1-245 96.3% 26.4% KDGA-----------------------GQQFEVIDQHGCTLD--QLMLQTPTYSE----------------DGMSAQVDA 34 1086835/1-243 95.0% 26.7% EDGQ-----------------------GNKILIIDQNGCGID--HYVMDTPIYNG----------------EQSIAFQET 35 XL44949_1/1-25 96.3% 8.2% TPTAN-------------------PEDKIRYPIIS-SGYPND-----TTVAMIQTL---------------DNSLTRFVM 36 PM20652_1/1-23 91.7% 9.7% SPYP-------------------GAPDSASFFLLQ-NGCRVD-----PSYSDYNS---------------GVNDRRRFSF 37 CEK06A1_1/1-25 95.0% 25.9% VGGE-----------------------EYSKKVIGENGCSED--IYIMPNLIYNE----------------NRTKAFVNS 38 CEY53C12B_1/1- 97.5% 27.2% EDGG-----------------------SDTVQVVDENGCTTDG--ELLSPIKYKE----------------GSMRAAASS 39 1314322/1-250 93.4% 10.5% TETS-------------------DSSVEPKLYLLQ-NGCKPDG--VGADLMSTLQN--------------GNNTESRFIM 40 XL41839_1/1-25 95.9% 11.9% TPTS-------------------DPSDINKVYIVR-GGCAYT----NDVDSWVEQN--------------GKALEARIKL 41 GGTCTORIN_1/1- 93.4% 11.2% TPSS-------------------EYFYQVHWPLIT-KGCASD----FSIVVHENG----------------KTNRATFQF 42 let-653 93.8% 12.2% EPID-----------------PKYEWEHEPLFIIR-DGCPADG---VGLVCPPTHS----------------EFGAKVSV consensus/100% ................................hl..t.h......................................... consensus/90% p............................ph.ll..puC..p..........h........................h.. consensus/80% sss..........................ph.llp.pGC.hs..........h.t...................htth.h consensus/70% sss..........................pa.llp.sGCsh-....h.s...htt.................tthtphph cov pid 401 . . . . : ] 452 1 2648041/1-241 100.0% 100.0% HVYKYAD-------RSQLFYQCQISITIKEPHS-----ECA----RPKCAEP 2 CEF53F1_2/1-24 99.6% 46.4% HVYKFAD-------RDALFFQCQISITVKEPDQ-----ECV----RPICEDV 3 CEE04D5_2/1-24 98.8% 43.3% PVFKFAD-------KAGLYFNCQIQLTIKDVNY-----GCS--NTQPQCPTS 4 1322386/1-283 97.1% 9.7% KMFTFVDPASLAALQETIFIHCSTEVCHPSSG------SCE-----QSCARK 5 SSAJ664_1/1-28 96.3% 10.5% KMFTFVDPTSMVPLQENVYIHCRATVCHALAG------SCE-----QRCNRQ 6 OLD609_1/1-283 97.1% 11.7% KMFTFVDPHSMEPLREKVYIHCSTAACVPGQG-----VSCE-----PSCSRR 7 FC05777_1/1-27 97.5% 12.9% FTFSFVDTMAKWALRGPVYLHCNVSICQPAGTS-----SCR-----ITCPVA 8 MMONPEL4_1/1-2 97.1% 11.5% TTFMLLDSSSQNALRGQVYFFCSASACHPLGSD-----TCS-----TTCDSG 9 XL44950_1/1-27 97.1% 11.0% STFTFVDGTTQLPLGGMVYFHCSASVCIPSAAD-----TCR-----IVCNTR 10 AB000929_1/1-2 96.3% 9.9% KTFAFVSES--RGLSSLIYFHCSALICNQASP------LCS-----VTCPAP 11 AF079525_1/1-2 96.7% 9.8% TTFAFVSGG--QALSSLIYFHCSVLLCDQFHPDS---PLCS-----VTCPGS 12 AF038151_1/1-2 97.1% 7.7% KTFAFVLGG--DVLSNLVYFHCHAIICNKLAPDF---SLCS-----KTCSVG 13 GP2_RAT/1-253 95.9% 10.6% QMFMFAG------NYDLVFLHCEVYLCDSTTE------QCQ-----PSCSTS 14 2/1-252 95.4% 11.8% QMFRFAG------NYDLVYLDCEVYLCDTMNE------KCK-----PTCSGT 15 1915909/1-255 95.9% 12.5% TVFKFIG------DYDEVHLHCAVSLCDSEKY------SCK-----INCPQN 16 MM37438_1/1-24 93.4% 9.8% SSFHFLNRF------PSVYLQCKLVVCRAYDTSS----RCY-----RGCVVR 17 AF022147_1/1-2 93.4% 12.7% NAFKFLRHL------SSVYLKCKILICDTSDHTS----RCN-----QGCVSR 18 3387820/1-272 90.9% 9.7% KRFSFVFKS--VFNTSLLFLHCELTLCSRNKGSQ-KLPKCVTPD--DACTSL 19 GGTGFBA_1/1-28 91.3% 9.6% KRFSFVFKP--IFNISLLFLHCELTLCTNIDKDTQRLPKCVPPD--EACTSL 20 ZP3_RABIT/1-25 97.5% 10.6% AVFHFAND-----SRHTVYITCHLRVIPAQQAP-----DRLN----KACSFN 21 3060951/1-260 97.9% 10.9% DVFRFAGDT-----RNLIYITCHLKVTPADQGP-----DPQN----KACSFN 22 AF079524_1/1-2 97.9% 10.9% DSFRFAQD-----SRNEIYITCHLKVTATDQAP-----SPLN----KACSYN 23 1483163/1-258 97.9% 10.3% DAFRFTTS-----DSAVIYITCNLRAAATTQVP-----DPMN----KACSFS 24 CCZP3B_1/1-257 97.1% 11.7% EAFMFQGG-----SSPSIYITCVLKATLASAPS-----DVLH----KSCSFA 25 1729787/1-257 97.1% 9.1% EAFRFKG-----ADSGLLYITCHLKATSVAYPI-----DSDH----RACSYI 26 CEM142_1/1-247 98.3% 39.5% HVFKYAD-------RPVLQFQCQITLCLKYDG------GCEGITPPQNCKKL 27 CEW01A8_4/1-23 97.1% 30.0% QVFKYAD-------SNQLYFTCQIRLCQKQMG------MCQEVTP-PNCGVK 28 ZK265.8/1-253 97.5% 26.6% SVFKFAD-------KPGVWFFCQVQMCMKKHG------MCDGITP-PSCGSM 29 CET04F8_4/1-24 95.4% 31.0% FVFKFAD-------RIAVRFQCEIRLCLKDDG------GCDGITP-PMCSFK 30 CEF53B6_1/1-24 96.7% 31.1% HVFKYAD-------KVQLYFTCTVQLCYKHDG------GCEGITP-PQCSGH 31 CET22C8_7/1-24 96.7% 31.2% RAFRYAD-------QVMVHFSCQITTCQKQEN------GCEGISP-PICRPM 32 W04C9.3/1-249 96.7% 23.0% EAISFPD-------QPSISFSCQIKLCDKGSD------ECRGMSP-PACTPL 33 CEM28_7/1-245 96.3% 26.4% YIFKFPD-------RSTVDFRCTITFCSVDDA------ECLDMTP-PKCGAN 34 1086835/1-243 95.0% 26.7% HVFKFAQ-------RTVTRFICQIKICMKGD-------DCKRLSPPEACPSL 35 XL44949_1/1-25 96.3% 8.2% QMFHFIN-------YSEVYLHCKVLLCQPNSTV-----FCN-----RPDPYV 36 PM20652_1/1-23 91.7% 9.7% DSVEFFV-------GAQVYLECSVRVCNVSDWGS----RCR-----RGCLRG 37 CEK06A1_1/1-25 95.0% 25.9% NAFNFPD-------QNNVRISCKISVCPTLSG------TCH----QPKCDAS 38 CEY53C12B_1/1- 97.5% 27.2% HAFKFVD-------NHIVYFKCNIRITVKNPSG-----ECP----VNNCSPN 39 1314322/1-250 93.4% 10.5% KVFKFSA-------TSSLYLFADVTICNG---------TCI-----PDCSSR 40 XL41839_1/1-25 95.9% 11.9% STFSFQS-------QTNVYIFCNAMLCPNTTNS-----QCD------KCKTA 41 GGTCTORIN_1/1- 93.4% 11.2% NAFRFQN----IPKLSKVWLHCETHVCDSEKF------SCP-----VTCDKR 42 let-653 93.8% 12.2% EAFRYQT-------TGQVQYSCLVRICPFAPCP---KNTCDDV---EGCDSS consensus/100% ..h.h............h.h.s.h.hh.....................s... consensus/90% thFta.t..........lhh.Cph.hs............s........C... consensus/80% phFpFhs.......ts.lahpCph.ls...t.......tC.......tCs.. consensus/70% psFpFss.......ps.lahpCplplC.ttts......pCt......sCs.t