cov pid 1 [ . . . . : . . . 80 1 PHLC2_CLOPE/1-278 100.0% 100.0% MKRKIYKLLICATIATSLWAVRTTKVYA---------------------------------W---DGKADGT-GTHAMIA 2 Q8GCY3_9CLOT/1-278 100.0% 62.2% MNKKILKILSCTLLTGLICIGYTTKAYA---------------------------------W---DGKEDGT-GTHSVIV 3 Q97KA0_CLOAB/1-240 84.9% 15.2% MKKKFESTYGKTIRGIFFVINPVK-----------------------------------------KKVIKTTCIIHKYIN 4 PHLC_CLOSO/1-278 100.0% 56.1% MKRKFTKTVLNAVFVLGLCSIMGGTSYA---------------------------------W---DGKKDGT-GTHALIA 5 Q97TF6_CLOAB/1-271 88.5% 24.2% MKNVFKKITTAIIASSLT-LTFSFTTFAEALPQKTQSTYQELQNTTNRRI-----------Y---DFTSDGAKGTHEFIT 6 Q84FI6_BACCE/1-282 91.0% 23.5% MKKKVLALAAAITLVAPLQNVAFAHENDGGSKIKIVHR-----------------------W-SAEDKHKEGVNSHLWIV 7 PHLC_CLOHA/2-276 98.9% 55.2% NKKKILKFICSAVLSFTLFSGY--KSYA---------------------------------W---DGKVDGT-GTHALIV 8 PHLC_CLOBI/2-276 98.9% 53.8% ---KALKKVSNILCVLGLCTLMGGTSYA---------------------------------W---DGKKDGT-GTHSLIA 9 Q6EAE3_LISMO/1-289 88.8% 19.7% MKFKKVVLGMCLTASVLVFPVTIKANACCDEYLQTPAAPHDIDSKLPHKLS----------W-SADNPTNTDVNTHYWLF 10 Q6R6B7_LISSE/1-295 91.0% 18.4% MKIKGILMGLCLSASIVALSGADEASACGDESVKDQIAPHDIQNKLPSKLG----------W-SAEHPSKNEINTHLWLF 11 Q6R6D6_LISIV/1-287 88.5% 18.5% MRINKISLGIYVFIFALTASL-MKVNACSDDHLMQPQTP-NIEHKLPHKLS----------W-SAERPLDEKANTHLWLF 12 gi:18144371 91.0% 16.1% MDNMKKILKKMPKVM--------------------------------------------------KKSFKKS-NTHDVLL 13 PHLC_CLONO/1-278 100.0% 62.6% MKKKFLKGLCCAFVISITCLGASSKAYG---------------------------------W---DGKKDGT-GTHSMIV 14 gi|77995819/1-215 69.1% 14.8% MVEKALKIISPL-----------------------------------------------------QGFLDNVEPTHGFLL 15 Q896L3_CLOTE/23-236 76.6% 17.7% LKKKFLKTY-CTV--------------------------------------------------------------HKFIM 16 gi:57159640 86.3% 11.5% MKAVKALAVLALLLGNLGF-VSA--------------------------------------WPTNGPTLDDPMNVHQKLT consensus/100% ....h..hh..................................................................H.hl. consensus/90% ...hhh.hh..h.....................................................t...pt....H.hlh consensus/80% Mc.phhhhh.shhh...h...............................................ct..cts.soH.hlh consensus/70% M+tKhhthhhshhh...h..h........................................a...ct.hcss.sTHthlh cov pid 81 . 1 . . . . : . 160 1 PHLC2_CLOPE/1-278 100.0% 100.0% TQGVTILENDLS-----SNEPEVIRNNLEILKQNMHDLQ-LGSTYPDYDK-------NAYD--LYQDHFWDPDTDNNFTK 2 Q8GCY3_9CLOT/1-278 100.0% 62.2% TQAIEMLKHDLS-----KDEPEAIRNDLSILEKNLHKFQ-LGSTFPDYDP-------NAYS--LYQDHFWDPDTDHNFTQ 3 Q97KA0_CLOAB/1-240 84.9% 15.2% SLAVEILKNKRK-----AKQYK-------FFSDNIEAIN-EGTVWADQDF-------KSTN------HFFDFEKGRG--- 4 PHLC_CLOSO/1-278 100.0% 56.1% EHGLTMLNNDLN-----QNEPKPIKQNIEILNKYLKDLK-LGSTFPDYDP-------NAYD--LFQDHFFDPDTGNNFTL 5 Q97TF6_CLOAB/1-271 88.5% 24.2% VQAMTILGNDKG-----NNFKN-------LIKNYEPTLR-QYCDKPDKDE-------NQWA---FAYHFYNPYTGLN--- 6 Q84FI6_BACCE/1-282 91.0% 23.5% NRAIDIMSRNKT-----LVKQDRVA----LLNEWRTELE-NGIYAADYEN-------PYYDNSTFASHFYDPDNGKT--- 7 PHLC_CLOHA/2-276 98.9% 55.2% TQAVEILKNDVI-----STSPLSVKENFKILESNLKKLQ-RGSTYPDYDP-------KAYA--LYQDHFWDPDTDNNFTK 8 PHLC_CLOBI/2-276 98.9% 53.8% EHGLSMLNNDLS-----GNESQQVKDNIKILNEYLGDLK-LGSTYPDYDP-------NAYD--LYQDHFYDPDTGNNFTI 9 Q6EAE3_LISMO/1-289 88.8% 19.7% KQAEKILAKDVN-----HMRANLMN----ELKKFDKQIA-QGIYDADHKN-------PYYDTSTFLSHFYNPDRDNT--- 10 Q6R6B7_LISSE/1-295 91.0% 18.4% NQAEKILAKDVT-----GAQLDLVR----ELKNYNKEIA-QGIFDADHKN-------PYYDKNTFLSHFYNPKTHKT--- 11 Q6R6D6_LISIV/1-287 88.5% 18.5% KQARKILAKENN-----GAYKELLE----MLNKYYKEVA-QGIFDADHKN-------PYYDCSTFVSHFYNPTKDNT--- 12 gi:18144371 91.0% 16.1% EQANRMVINDNNLYLNNKWFSKSLKWCMDILELNYNVSKSLGWIRPSYSRKPDIMLRSVVT--LFSFHFYHGEDKDN--- 13 PHLC_CLONO/1-278 100.0% 62.6% TQAVKVLENDMS-----KDEPEIVKQNFKILQDNMHKFQ-LGSTYPDYDP-------NAYK--LFQDHFWDPDTDHNFSK 14 gi|77995819/1-215 69.1% 14.8% NKALIQLQEKNY-----KTSY---------YERYYRQIY-CGLYAADKGW-------QNVT------HYFNPRTKKG--- 15 Q896L3_CLOTE/23-236 76.6% 17.7% LQSLDILKNSEH-----QEAYN-------FFKDNLAKLN-EGTTWADQDF-------KSSN------HFFHFSKGKG--- 16 gi:57159640 86.3% 11.5% YKAIEAVYADNP-----GLGAILMQYKDQLLYGAYDEDW-RGGNITFNGK-------VYTLQSQY--HFLDPMDHAELIT consensus/100% ..u...h.tp....................h..........h...s..t..................Hahp..pt.t... consensus/90% .pu.phl.pp.......t............hpt..tt....G...ss.t..........ht......HFap..ptts... consensus/80% ppuhphLtpc.t.....t.t.p.......hlpp.hppht..G.hhsDhc..........hs...a..HFasPpptps... consensus/70% ppAhphLtp-.s.....ttt.p.ht....hLpp.hpplt..G.hhsDhc........shhs...a..HFasPcssps... cov pid 161 . . . 2 . . . . 240 1 PHLC2_CLOPE/1-278 100.0% 100.0% DSKWYLSYSIP-DTAESQIRKFSALARYEWKRGNYKQ---ATFY--LGEAMHYFGDADTPYHAAN--VTA---------- 2 Q8GCY3_9CLOT/1-278 100.0% 62.2% DNKWYLSYAVP-DNAESQTRKFATLAKNEWDKGNYEK---AAWY--LGQGMHYFGDLNTPYHAAN--VTA---------- 3 Q97KA0_CLOAB/1-240 84.9% 15.2% -----LYG--F-SNLVDEAQKYYNMSLNYLRAGDKKK---SLFY--LGAACHIIQDSTVPQHVNN--RLL---------- 4 PHLC_CLOSO/1-278 100.0% 56.1% DNKWYVASPIY-DTAETQVRKFATLAENEWKKGNYKE---ATFL--LGQGMHYLGDLNTPYHAAN--VTA---------- 5 Q97TF6_CLOAB/1-271 88.5% 24.2% ----YLPSILP-QSKTTALTKFEEHAANAVSSYRTDR---TYSMQELGRACHFLEDVNVPYHSAN--LIA---------- 6 Q84FI6_BACCE/1-282 91.0% 23.5% ----YIPY--A-KQAKETGAKYFKLAGESYKNKDMKQ---AFFY--LGLSLHYLGDVNQPMHAAN--FTN---------- 7 PHLC_CLOHA/2-276 98.9% 55.2% DSKWYLAYGIN-ETGESQLRKLFALAKDEWKKGNYEQ---ATWL--LGQGLHYFGDFHTPYHPSN--VTA---------- 8 PHLC_CLOBI/2-276 98.9% 53.8% DNSWYASYPIY-DTSRNSVRKFATLAKNEWEKGNFKE---ATFL--LGQGLHYLGDLNTPYHASN--VTA---------- 9 Q6EAE3_LISMO/1-289 88.8% 19.7% ----YLPG--F-ANAKITGAKYFNQSVTDYREGKFDT---AFYK--LGLAIHYYTDISQPMHANN--FTA---------- 10 Q6R6B7_LISSE/1-295 91.0% 18.4% ----YIAG--F-PNAKDTGTKYFNISIEEYQDGNFEK---AFYN--LGLAIHYYTDISQPMHANN--FTA---------- 11 Q6R6D6_LISIV/1-287 88.5% 18.5% ----YLPG--F-KNAKQTCGKYFKQALQDYKEDKLNT---AFYK--LGLSIHYFTDCSQPMHANN--FTA---------- 12 gi:18144371 91.0% 16.1% ----YFGRIGKGKTAMCKFIFFGRKALKYRDKGKRRK---CMKY--LSYSCHYLADMSEPHHVTH--HIASPNEKIMNVL 13 PHLC_CLONO/1-278 100.0% 62.6% DNLWYLSYSIK-DTAESQVRKFTALARNEWEKGNYEK---ATWY--FGQAMHYFGDLNTPYHAAN--VTA---------- 14 gi|77995819/1-215 69.1% 14.8% -----LFI--F-LSAKEAFYQELKNFHKFSEQKNPK----AFWH--FGRAAHILQDLCEPHH----LKPT---------- 15 Q896L3_CLOTE/23-236 76.6% 17.7% -----LYG--F-SNALLECKKYYDKSLENLEKGDLDK---AMFF--LGAACHLIQDVTVPQHVNN--KLL---------- 16 gi:57159640 86.3% 11.5% VDL-FGDG--K-SSAADMAQQLYDQAVQLWKQGKKEE---AMLY--LGRAVHILEDMS----------ML---------- consensus/100% .....h.......p....h....t......pt.p.p....sh....hu.uhHhhtD.p...................... consensus/90% .....h.......st..th.ph.t.uhp.hpptphcp...shhh..hG.uhHhhtDhs.P.H.....hhh.......... consensus/80% ....alsh....psutpphtKahp.uhp.hcpsphcp...Ahah..LG.uhHhhtDhs.PhHssN..hhs.......... consensus/70% ....Ylsh..h.psAppphtKahphuhpthcpGphcp...Ahah..LG.uhHahtDhspPhHssN..hhs.......... cov pid 241 : . . . . 3 . . 320 1 PHLC2_CLOPE/1-278 100.0% 100.0% ----VDSPG------HVKFETF-A--------------EDRKDQ-----------------YKINTT-GSKT--NDAFYS 2 Q8GCY3_9CLOT/1-278 100.0% 62.2% ----VDSPG------HVKFETY-A--------------EERKDT-----------------YRLDTT-GYNT--DDAFYK 3 Q97KA0_CLOAB/1-240 84.9% 15.2% -----NS--------HRNFEMWII--------------QKFLSG-----------------YRFMKA-DE---------- 4 PHLC_CLOSO/1-278 100.0% 56.1% ----VDSPG------HVKYETF-V--------------ENRKEN-----------------YALNTA-GNDT--TQGIYK 5 Q97TF6_CLOAB/1-271 88.5% 24.2% ----VLST-------HSQYEQF-V--------------QDHQTS-----------------YALNST-DK---------Y 6 Q84FI6_BACCE/1-282 91.0% 23.5% ----LSYPQGF----HSKYENF-V--------------DTIKDN-----------------YKVTDG-NG---------Y 7 PHLC_CLOHA/2-276 98.9% 55.2% ----VDSAG------HTKFETY-V--------------EGKKDS-----------------YKLHTA-GANS--VKEFYP 8 PHLC_CLOBI/2-276 98.9% 53.8% ----VDSPG------HVKYETF-V--------------EERKDN-----------------YALNTS-GNDT--TSGVYK 9 Q6EAE3_LISMO/1-289 88.8% 19.7% ----ISYPPGY----HCAYENY-V--------------DTIKHN-----------------YQATED-MV---------A 10 Q6R6B7_LISSE/1-295 91.0% 18.4% ----LSHPVGY----HCAYENY-V--------------DTFKQI-----------------FQASAE-SE---------A 11 Q6R6D6_LISIV/1-287 88.5% 18.5% ----VSNPIGF----HSVYENY-V--------------DSIKCN-----------------YQATES-ME---------V 12 gi:18144371 91.0% 16.1% KRFDINKIGKGNFSNHRRFENL-AQAWIKGDEDITLLLDKNKDKDENILLKGVPTKGEIFSYILKDE-GIKVF-NEDDKK 13 PHLC_CLONO/1-278 100.0% 62.6% ----VDSIG------HTKYEGF-A--------------EKRKDQ-----------------YRINTT-GIKT--NEGFYA 14 gi|77995819/1-215 69.1% 14.8% ---FLN--G------HKKFERW-V-----------------GDNIKIIIRKL---------YLPPALRPWLTLEIESFSS 15 Q896L3_CLOTE/23-236 76.6% 17.7% -----KS--------HRRFELWII--------------SRLLND-----------------YSFMAE-HE---------- 16 gi:57159640 86.3% 11.5% ----IA---------HTTPHLF-----------------ETLDE-----------------FSYAEEAHD---------- consensus/100% ...............H...c.h....................p..................a...t.............. consensus/90% .....t.........H.taE.a.h...............t.hpt.................a.h.tt............. consensus/80% ....ls.........HhpaEta.s..............pphtsp.................Ythtpt.t........... consensus/70% ....lsp........HspaEpa.s..............pphpsp.................Ythsst.s........... cov pid 321 . . : . . . . 4 400 1 PHLC2_CLOPE/1-278 100.0% 100.0% NIL----TNE---DFNSWSKEFARSF--------AKT----AKDLYYSHANMSCSWDEW-----DYAAKVALANSQKGTS 2 Q8GCY3_9CLOT/1-278 100.0% 62.2% DTL----KND---NFNEWSKGYCKYW--------AKK----AKNLYYSHATMSNSWDDW-----EYAASHGVGNAQKGVA 3 Q97KA0_CLOAB/1-240 84.9% 15.2% -II----RSD---NTRDYIRKNAKVA----------------NKIYNKCFTIKDKEARY-----DAISNYIICQAQMSTA 4 PHLC_CLOSO/1-278 100.0% 56.1% DAV----ANK---DFDQWMTQNSVKY--------AKK----AKALYYSHSTMKHNWDDW-----DYSGREAIKNSQVCTA 5 Q97TF6_CLOAB/1-271 88.5% 24.2% GNY----YSE---NFNDYCYDILNDC---------------AKYSYSFKDEVQKSESSW-----DSVANVTVKYAEGYVA 6 Q84FI6_BACCE/1-282 91.0% 23.5% WNW----KGT---NPEDWIHGAAVVAKQDYAGIVNDN----TKDWFVRAAVSQEYADKW-RAEVTPMTGKRLMDAQRVTA 7 PHLC_CLOHA/2-276 98.9% 55.2% TTL----QNT---NLDNWITEYSRGW--------AKK----AKNMYYAHATMSHSWKDW-----EIAATETMHNVQIGSA 8 PHLC_CLOBI/2-276 98.9% 53.8% EAM----ENP---SFNKWMTQNSIKY--------AKI----AKDLYYSHSTMSHSWDDW-----DYSGREAIKNSQVCTA 9 Q6EAE3_LISMO/1-289 88.8% 19.7% KRF----CSD---DVKDWLYENAKRAKADYPKIVNAK----TKKSYLVGNS------EW-KKDTVEPTGARLRDSQQTLA 10 Q6R6B7_LISSE/1-295 91.0% 18.4% KWF----CTD---DVSEWFHENAKRAQADYPKIVNTI----IKKSYIQGLSDSQKDRTW-KKAVRAATGKRLRDSQETLA 11 Q6R6D6_LISIV/1-287 88.5% 18.5% KKF----CVD---TPEEWLRENAKRAQADYDKIVNAN----TKKSYLEGNSK------W-KKDIDKPTGERLQDSMQTLA 12 gi:18144371 91.0% 16.1% KVLDIYYKNS---NLD--FDDYCRYL--------GNESSEYAKELI--HDAFKDDTREQ-----ALAAIRALNMAEIQLA 13 PHLC_CLONO/1-278 100.0% 62.6% DAL----KNS---NFDSWSKEYCKGW--------AKQ----AKNLYYSHSTMKHTNEDW-----DYSASHALKNAQMGTA 14 gi|77995819/1-215 69.1% 14.8% KILD-YYE------------------------LVGEK----AGD-----------------ISYFRAAQELLAAAVKLTM 15 Q896L3_CLOTE/23-236 76.6% 17.7% -IV----RYS---NLDEYIVNNAFLA----------------NNTYIKYMNVENREEKY-----SKIASIVLKEAQKTTA 16 gi:57159640 86.3% 11.5% -FV----ENDISPTVADDILNNRVPL----------------DLTPIKWWQIPQEKQRFIIGEDIYVADNENGHMDLSH- consensus/100% ..h.......................................t........................s............ consensus/90% ..h....t.....s.t....t....h................p.....h..................st.hht.s...h. consensus/80% .hh....psp...shppa.hp.sh.h...............hcp.a..t.s..p..tpa.....thsst.tltpuphshA consensus/70% thh....pss...shppahhp.shhh........st.....sKp.Yhtt.shppp.pca.....phsutttltpuphshA cov pid 401 . ] 420 1 PHLC2_CLOPE/1-278 100.0% 100.0% G-YIYRFLHDVSDGKDSS-- 2 Q8GCY3_9CLOT/1-278 100.0% 62.2% G-YLYRFLNDVSNKDAVD-- 3 Q97KA0_CLOAB/1-240 84.9% 15.2% G-LMMDYYEKYEVIYKNHST 4 PHLC_CLOSO/1-278 100.0% 56.1% G-FLYRFINEVSEDQISG-- 5 Q97TF6_CLOAB/1-271 88.5% 24.2% A-FFYRFLHEVGE------- 6 Q84FI6_BACCE/1-282 91.0% 23.5% G-YIQLWFDTYGD------- 7 PHLC_CLOHA/2-276 98.9% 55.2% G-IIYRFLNEVSGTINT--- 8 PHLC_CLOBI/2-276 98.9% 53.8% G-FLYRFMNEVSNGNTGD-- 9 Q6EAE3_LISMO/1-289 88.8% 19.7% G-FLEFWSKKTNE------- 10 Q6R6B7_LISSE/1-295 91.0% 18.4% G-LLEFWYTKTNE------- 11 Q6R6D6_LISIV/1-287 88.5% 18.5% G-FIDFWYKKADQ------- 12 gi:18144371 91.0% 16.1% R-FLYYFCNYNLKEERFVEP 13 PHLC_CLONO/1-278 100.0% 62.6% G-CIYRFLYDVSKDLLPT-- 14 gi|77995819/1-215 69.1% 14.8% DLFL---ENEIYFR------ 15 Q896L3_CLOTE/23-236 76.6% 17.7% G-FLLDYYENVKNEES---- 16 gi:57159640 86.3% 11.5% GVAWAYADMIAHNAWRYMLY consensus/100% t.hh................ consensus/90% s.hh..h...h......... consensus/80% G.hl.hahppstp....... consensus/70% G.hl.hahpcspp.......