Family alignment for the zf-C4_ClpX domain, displayed in

                                     cov    pid  1 [        .         .         .         .         ] 50
 1 416269.APL_1279_from_7_to_46   100.0% 100.0%    EPHCSFCGKRRTEVDQ-----LVEG----TEGYICNHCIE-ESYALLNGE   
 2 262724.TTC0251_from_5_to_46    100.0%  42.9%    RPHCSFCGLRPPETGR-----LLESPI--EDVYICEDCVE-RAQEILAQE   
 3 243090.RB9927_from_58_to_98    100.0%  41.5%    NAFCSFCRKSYRDVGP-----LVEGP---GDVYICAECID-LCQSILDQE   
 4 380703.AHA_2012_from_12_to_51   95.0%  38.1%    LLYCSFCGKSQHEVRK-----LIAGPS----VYICDECVE-LCNDIIREE   
 5 156889.Mmc1_3641_from_11_to_50  95.0%  31.0%    ILHCSFCGKSQNEARK-----LIAGPS----VFICDECVD-LCMEIIRED   
 6 364106.UTI89_C0946_from_62_to_  95.0%  33.3%    TIYCSFCNKSQYEVTK-----VIAGPS----VYICNECVD-LCNEIIRRE   
 7 110662.Syncc9605_0064_from_7_t  95.0%  38.1%    HLKCSFCGKSQDQVRK-----LIAGPG----VYICDECID-LCNEILDEE   
 8 281090.Lxx07870_from_10_to_49   95.0%  35.7%    LLKCSFCGKSQKQVQQ-----LIAGPG----VYICDECVE-LCNEIIEER   
 9 405948.SACE_7334_from_10_to_50  95.0%  34.9%    RVRCSFCGKTQQQVRK-----VIAGPAG---VYICDECVE-LCNELVEEE   
10 278197.PEPE_1141_from_10_to_49  95.0%  33.3%    PVTCSFCGKTQDQVKK-----IIAGPD----VYICNECVD-LCKEIIDEE   
11 362948.LSL_0644_from_10_to_49   95.0%  35.7%    PATCSFCGKTEDQVKS-----MISGPG----VYICNECVE-LAQSIIDTE   
12 257314.LJ1011_from_10_to_49     95.0%  42.9%    EVKCSFCGKPQSQVKK-----IVAGNG----VYICNECID-LSKKIIDDE   
13 203120.LEUM_1521_from_10_to_50  95.0%  41.9%    EIHCSFCGKSASEVKK-----IVAGPND---VYICNECVA-LAEGIIEEE   
14 210007.SMU.949_from_10_to_49    95.0%  40.5%    TVHCSFCGKNQDEVKK-----IIAGNG----VFICNECVE-LSQEIIREE   
15 203123.OEOE_1729_from_12_to_51  95.0%  35.7%    TLACSFCGKRQDQVKK-----LIAGPG----VYICDECVA-LAQHIIDQE   
16 243265.plu0848_from_11_to_50    95.0%  40.5%    CLYCSFCGKKQDEVAK-----LIAGPS----VYICNECVA-LSQGIIDEE   
17 158878.SAV1674_from_10_to_49    95.0%  42.9%    NLKCSFCGKDQDQVKK-----LVAGSG----VYICNECIE-LCSEIVEEE   
18 272623.L163602_from_8_to_47     95.0%  47.6%    NIHCSFCGKSQDDVKK-----LIAGSD----VYICNECIE-LSTRILEEE   
19 36870.WGLp154_from_12_to_51     95.0%  35.7%    FLCCSFCGKNQNEVKK-----LIAGMS----VYICDECVI-LCNNIVQEE   
20 224915.bbp420_from_12_to_51     95.0%  38.1%    LLCCSFCEKNQKEVKK-----LIAGLS----AYICDECIK-LCNNILEEE   
21 198804.BUsg460_from_12_to_51    95.0%  35.7%    LLQCSFCGKNQKEVKK-----LIAGPA----VYICDECIR-LCNNIIQET   
22 56780.SYN_02786_from_14_to_53   95.0%  42.9%    MLFCSFCGKTQNEVKK-----LVAGPT----AYICDECIE-LCRCIVEEE   
23 357244.OTBS_0948_from_9_to_48   95.0%  40.5%    ALSCSFCCKNQNEVKK-----LIAGFS----GFICDECIE-LCIHLIEEE   
24 338963.Pcar_1688_from_10_to_49  95.0%  38.1%    YLTCSFCGKGQDDVKK-----LIAGPE----VYICDECIE-LCKDIIAEE   
25 293613.A1E_04600_from_9_to_48   95.0%  35.7%    ELICSFCSKKQHEVKK-----LIAGPA----VFICDECID-LCMDIMKEE   
26 234826.AM310_from_8_to_47       95.0%  42.9%    AYSCSFCGKLHSEVRK-----LIAGPR----VYICNECVE-LCSGILQEE   
27 272563.CD3304_from_9_to_48      95.0%  35.7%    QLKCSFCGKNQDQVRR-----LIAGPN----VYICDECVE-LCDEIIQEE   
28 195102.CPE1392_from_9_to_48     95.0%  38.1%    QLRCSFCGKNQEQVKR-----LIAGPG----VYICDECIE-LCSEIIEDE   
29 351627.Csac_0880_from_9_to_48   95.0%  40.5%    TLRCSFCGKSQDEVRR-----LVAGPG----VYICDECVE-LCSEIISEE   
30 189518.LA2558_from_13_to_52     95.0%  35.7%    KLFCSFCGKEQDAVKR-----LVAGPG----VYICDECIS-LCNEIIAED   
31 391774.Dvul_1733_from_11_to_50  95.0%  35.7%    ELRCSFCAKGQDEVKR-----LIAGPG----VYICDECVA-LCNEIVAHE   
32 207559.Dde_2219_from_11_to_50   95.0%  38.1%    EPRCSFCQKGPDSVKR-----LISGPD----VYICDACVE-LCNEIIAQE   
33 357808.RoseRS_3663_from_17_to_  95.0%  32.6%    AYLCSFCGRGQEEVQR-----LIAGPGN---VFICDECVA-LCSAIIAEE   
34 224324.aq_1337_from_7_to_47     95.0%  39.5%    KEFCSFCGKRQDEVLI-----LIAGPNN---TYICDECVE-KCYQIVREN   
35 203267.TWT479_from_6_to_45      95.0%  35.7%    EYRCSFCGKEHHQVDD-----LIAGPD----VRICSECVV-LSCEIVEDR   
36 204669.Acid345_1559_from_10_to 100.0%  27.3%    VLRCSFCHKSQDAVAK-----LISSPSDYPRAYICDECVA-VCNSILEDD   
37 122586.NMB1372_from_5_to_44     95.0%  33.3%    NRTCSFCGKSKSHVKH-----LIEGEN----AFICDECVS-NCIEILHED   
38 177439.DP2537_from_10_to_49     95.0%  40.5%    ENSCSFCGRSQEEVDK-----LIAGPD----VFICNECIE-LCNEIVQED   
39 279238.Saro_3012_from_9_to_48   95.0%  38.1%    TIYCDFCGKSQHEVRK-----LIAGPS----SFICNGCIE-LCVYILVSD   
40 163164.WD0318_from_7_to_50     100.0%  36.4%    LHYCSFCNKAQDEVDK-----LITNSSDGLKVFICNECIE-LSHKAISQK   
41 291272.BPEN_254_from_13_to_52   95.0%  31.0%    TLCCSFCGKDQNQVLK-----LIAGLS----AHICDTCVG-LCKDIISQE   
42 203907.Bfl247_from_12_to_51     95.0%  33.3%    SLCCSFCGKNHLQVLK-----LITGKS----ARICNICIH-LFNNIVTNI   
43 372461.BCc_294_from_10_to_49    95.0%  33.3%    IILCSFCKKNQKKTKK-----MITGLS----GHICDQCIL-LCYDILNKN   
44 391009.Tmel_0626_from_3_to_43   97.5%  35.7%    QKFCSFCGRSSDKVEK-----LIAGPG---NVYICNDCVE-IFHDILYED   
45 243274.TM0146_from_3_to_43      97.5%  38.1%    GKFCSFCGRDIQQVER-----LIAGPN---NVYICNECID-LFHDLLRSD   
46 115711.CP1023_from_6_to_45      97.5%  34.1%    LTICSFCGRSEKDVEK-----LIAGP----SVYICDYCIK-LCSGILDKK   
47 264201.pc1377_from_10_to_49     97.5%  31.7%    LASCSFCGRTEEAVEK-----LISGP----NVYICDKCVR-LCTGILDKK   
48 221988.MS1846_from_6_to_45      95.0%  47.6%    ETTCSFCGKSQDEVGK-----LIAGVD----GYICGECID-LCHDLLHDE   
49 62977.ACIAD0535_from_8_to_47    95.0%  40.5%    QKHCSFCGKSQAEVGK-----LIAGEN----AYICNECVD-VCLDLVQTS   
50 205914.HS_1433_from_6_to_45     95.0%  52.4%    ELHCSFCGKEQKEVDK-----LIAGTS----GYICNECIE-LCHDMLANA   
51 281310.NTHI0846_from_7_to_46    95.0%  50.0%    DLHCSFCGKEKGEVDR-----LIAGTD----GYICNECIE-LCHSMLEES   
52 335284.Pcryo_2235_from_6_to_45  95.0%  42.9%    TPQCSFCGKEKSEVKQ-----LIAADD----ANICNECIE-LCTDLIADS   
53 412965.COSY_0204_from_17_to_56  95.0%  40.5%    ELVCSFCGKIKSKVER-----LIAGPG----VYICNECIR-SCHDLIEKQ   
54 413404.Rmag_0206_from_7_to_46   95.0%  40.5%    ELVCSFCGKGKSEVGR-----LIKGPG----VFICNKCVE-SCHDLIEDQ   
55 243276.TP0508_from_9_to_48      95.0%  35.7%    VLGCSFCGKKEDERRR-----IVTGHG----VSICNYCVE-RCAEYLRDR   
56 273121.WS1403_from_3_to_43      95.0%  37.2%    NLQCSYCGKKEPLVKR-----IFGGSHQ---AFICNECIV-EFFNLLERE   
57 119857.FTL_0893_from_4_to_43    95.0%  33.3%    ILYCSFCGKSQQEVKN-----IISGRD----GNICNECVS-KCAEKIRST   
58 363253.LI0795_from_10_to_49     95.0%  38.1%    QLLCSFCGKGEYEVKQ-----LIAGDG----VHICDACIA-SCNEILVRQ   
59 206672.BL0943_from_36_to_75    100.0%  37.5%    VPRCTFCGKTEHQVRK-----LVAG----PNASICDECIA-LCVDIISEE   
60 222891.NSE_0753_from_8_to_47   100.0%  40.0%    VPKCSFCGETEDKVRK-----LVAG----MSAFICDRCIA-LCSNVLSEE   
61 290318.Cvib_0561_from_21_to_60 100.0%  42.5%    PVYCSFCGRSSQEVDS-----MVAG----PNAFICDRCIR-TSHDILRKE   
62 290317.Cpha266_0631_from_18_to 100.0%  42.5%    QVLCSFCGRTTHEVNS-----MVAG----PNAFICDRCIK-TSYEILRKE   
63 340177.Cag_0183_from_20_to_59  100.0%  35.0%    NVFCSFCGRPAYEVGS-----MVAG----PNVFICDRCIA-AANDVLLHQ   
64 272559.BF3893_from_8_to_47     100.0%  37.5%    KKRCSFCGRSENEVGF-----LITG----MNGYICDSCAT-QAYEITQEA   
65 435591.BDI_2395_from_6_to_45   100.0%  30.0%    GDTCTFCGRSSRDVNL-----LING----ISGCICDDCAR-QAYEIVKEQ   
66 269798.CHU_1707_from_3_to_42   100.0%  32.5%    QQTCSFCERPKKDVLL-----MITG----IHANMCDKCIT-QSYQILQEE   
67 242619.PG0417_from_7_to_46     100.0%  35.0%    EEYCSFCGMPRTQVNL-----MLEG----VHAHICDECAL-RAGEVVREA   
68 411154.GFO_0224_from_5_to_44   100.0%  35.0%    DLECSFCGRKKPETNL-----LIAG----LDAHICDRCIE-QAHGIVVEE   
69 187272.Mlg_0274_from_18_to_57  100.0%  42.5%    HAHCSFCGRPEDQTGP-----LIAG----AEAWICEDCVA-ESKARLDSE   
70 246197.MXAN_4216_from_283_to_3 100.0%  39.0%    DAWCSFCCRPRTDTGG-----LVAGP---AGAFICKNCLF-ESQSLLGDV   
71 349124.Hhal_0997_from_27_to_66 100.0%  37.5%    ERRCSFCGYEEQIAGP-----LIGG----EAAFICEHCIA-SCNATLEAD   
72 379731.PST_1358_from_6_to_45   100.0%  32.5%    KPCCSFCGAEKSPTVP-----LIAG----NEGRICEACVK-LAHQVVTSW   
73 243233.MCA1829_from_18_to_57   100.0%  32.5%    TQHCSFCGIEQGRDTP-----LIAG----IEGQICEACVR-LAEQVVANW   
74 420246.GTNG_1343_from_110_to_1  92.5%  25.0%    DGRCSFCLKEKPR--------LING----PLASICEDCLQ-FGLQVITKQ   
75 387092.NIS_0542_from_2_to_43   100.0%  35.7%    LKKCSFCGSFESRDNP-----LIAGSD--SNVYICKNCIV-SAYKILFGD   
76 326298.Tmden_1464_from_3_to_42 100.0%  30.0%    IRTCSFCNALESDENP-----LIAG----SGVYICKNCVV-SAYKIMFGD   
77 273121.WS0058_from_3_to_42     100.0%  37.5%    SRQCSFCRAKETKTNP-----LIAG----NSVYICKNCVI-SAYKILFGE   
78 387093.SUN_1110_from_3_to_42   100.0%  42.5%    IKSCSFCGTRESEENP-----LIAG----ENAYICSNCVI-SAYKILFGE   
79 367737.Abu_2214_from_3_to_42   100.0%  27.5%    KLICDFCGATDTKDNP-----VITG----DNACICKSCVN-AAHDIMNGN   
80 360106.CFF8240_0316_from_2_to_ 100.0%  33.3%    ARKCSFCGESEAEDRK-----LLANET--DSAFICEYCID-AGYAAVHGD   
81 360104.CCC13826_2124_from_2_to 100.0%  28.6%    ARKCNFCGEAESAERR-----LLADIE--GNAYICEYCIA-AAYDMIHGD   
82 192222.Cj0275_from_12_to_53    100.0%  26.2%    PRKCSFCNEVENPQRR-----ILANEN--DDAFICEYCVE-GAYSIIYGE   
83 360107.CHAB381_1353_from_2_to_ 100.0%  26.2%    SRICSFCGHSDSDGRK-----IIPNEK--GDAFICEECVK-IAGSVLDGE   
84 235279.HH1183_from_5_to_47     100.0%  30.2%    KKRCSFCNKEESLDNP----IINSGIT--PDVYICNYCLI-VGSEILTGY   
85 357544.HPAG1_1320_from_4_to_50 100.0%  19.1%    TLYCSFCKKPESRDPKKRRIIFASNLN--KDVCVCEYCID-VMHGELHKY   
86 243275.TDE1673_from_9_to_49    100.0%  24.4%    ALICSFCNKPESSERF-----VVPGP---GGIAICDRCVD-LCESYIKSY   
87 218491.ECA2626_from_65_to_105  100.0%  31.7%    EYKCSFCGTPRLYAKK-----IIVGQ---GNVCICDRCVE-HALGILKPG   
88 243230.DR_1973_from_6_to_47    100.0%  33.3%    ADRCSFCGRQHPQIAQ-----LIEAPG--RAAFICNECAE-RAFDLVKQQ   
89 190304.FN2015_from_5_to_45      97.5%  38.1%    MDRCSFCGRTEREVTQ-----LFQGPG--DV-FICDSCVE-SCHSLLRDD   
90 362242.MUL_2703_from_11_to_50   95.0%  38.1%    QIWCSFCAKPDTEIDM-----LVAGAG----VQICNECVA-TAAAIMDTY   
91 405948.SACE_1878_from_10_to_49  95.0%  40.5%    NPACSFCGAGTAEVEH-----LVSGPG----VWICGGCVR-GSYEIIKGL   
92 246195.DNO_0228_from_4_to_43    95.0%  35.7%    LIKCSFCGKSEQEVNH-----IVGGNG----VYICDSCVA-GCQNLMQNQ   
93 224326.BB0612_from_9_to_49      97.5%  23.8%    VKECSFCGLSVAELGG---NVVISN-----GVAICPECSK-ICHNLFKEK   
94 420247.Msm_1396_from_152_to_19  97.5%  31.7%    SAWCSVCGEKVTDGRH-----LVRG-----GKPICISCAEGSYYEVIEDD   
95 441772.CLI_0646_from_7_to_46    95.0%  16.7%    KATCSVCLREVGLKRY-----KIKKSN----AWICPECLK-RAGGVLAVD   
   consensus/100%                                  ...CshC..............h..t........hC..C........h...   
   consensus/90%                                   ...CSFCtt.p.t.t......lltu......shICptCl...s.thl.tt   
   consensus/80%                                   .hhCSFCu+tpppst......llsG......saICspClt.hs.plltpp   
   consensus/70%                                   thhCSFCG+sppplpp.....LluG......saICscClp.hstpllppp