Domains within Homo sapiens protein SMD1_HUMAN (P62314)
Small nuclear ribonucleoprotein Sm D1
Alternative representations: 1 /
| Protein length | 119 aa |
|---|---|
| Source database | UniProt |
| Identifiers | SMD1_HUMAN, P62314, ENSP00000300413.4, ENSP00000300413, B5BTZ1, P13641, SMD1_BOVIN, Q3ZC10, A0A091DA40_FUKDA, A0A091DA40, SMD1_MACFA, Q4R5F6, SMD1_MOUSE, P62315, Q3UYM0, H9ZCP5_MACMU, H9ZCP5, H2QEB7_PANTR, H2QEB7, F7I755_CALJA, F7I755, H2PXL0_PONAB, H2PXL0, E2RIW7_CANLF, E2RIW7, A0A2I2YB48_GORGO, A0A2I2YB48, A0A0D9RYI9_CHLSB, A0A0D9RYI9, A0A2K6K1G2_RHIBE, A0A2K6K1G2, A0A2K6DK94_MACNE, A0A2K6DK94, A0A2K5N9Q8_CERAT, A0A2K5N9Q8, A0A2K6NTC1_RHIRO, A0A2K6NTC1, F7G2W6_MONDO, F7G2W6, A0A2K5D3K3_AOTNA, A0A2K5D3K3, A0A096MSD9_PAPAN, A0A096MSD9, A0A2K6SL88_SAIBB, A0A2K6SL88, A0A2K6ETG1_PROCO, A0A2K6ETG1, G3WED5_SARHA, G3WED5, A0A2K5RM68_CEBCA, A0A2K5RM68, A0A2K5Y070_MANLE, A0A2K5Y070, F2Z5G9_PIG, F2Z5G9, A0A1U7SV70_TARSY, A0A1U7SV70, A0A1S2ZS62_ERIEU, A0A1S2ZS62, B2RZB7_RAT, B2RZB7, A0A0P6J7L6_HETGA, A0A0P6J7L6, A0A286Y245_CAVPO, A0A286Y245, A0A1S3F1Z1_DIPOR, A0A1S3F1Z1, A0A250XV41_CASCN, A0A250XV41, I3LWQ5_ICTTR, I3LWQ5, G3HGH4_CRIGR, G3HGH4, B5FY37_TAEGU, B5FY37, A0A2D4JP25_MICLE, A0A2D4JP25, A0A1D5PV79_CHICK, A0A1D5PV79, H9GB99_ANOCA, H9GB99, H2ZXR6_LATCH, H2ZXR6, A0A218V0P9_9PASE, A0A218V0P9, D2HZR3_AILME, D2HZR3, S7ML43_MYOBR, S7ML43, A0A287AHT5_PIG, A0A287AHT5, A0A1U7SJM6_TARSY, A0A1U7SJM6, A0A2I0LRD2_COLLI, A0A2I0LRD2, U3JJ00_FICAL, U3JJ00, A0A1D5PGA0_CHICK, A0A1D5PGA0, A0A1U8CY78_ALLSI, A0A1U8CY78, A0A226NEH9_CALSU, A0A226NEH9, A0A226PUC0_COLVI, A0A226PUC0, J3QLI9_HUMAN, J3QLI9, A0A2J8XGG1_PONAB, A0A2J8XGG1, A0A2J8MPE5_PANTR, A0A2J8MPE5, A0A2I2U9H4_FELCA, A0A2I2U9H4, A0A2K6G4E7_PROCO, A0A2K6G4E7, G5BTR9_HETGA, G5BTR9 |
| Source gene | ENSG00000167088 |
| Alternative splicing | SMD1_HUMAN, J3QLR7_HUMAN, ENSP00000463568.1 |
Domain architecture analysis
Display all proteins with similar:
| Domain organisation | Proteins having all the domains as the query in the same order. Additional domains are allowed. |
|---|---|
| Domain composition | Proteins with the same domain composition have at least one copy of each of the domains of the query. |
This domain architecture was probably invented with the emergence of cellular organisms
Predicted functional partners
SMD1_HUMAN is shown as 
SNRPD1 in the network
Click and drag to pan the network, and zoom by using your mouse wheel. Click the protein nodes for additional options.
The network on the left comes from STRING, a database of known and predicted protein interactions. Displayed here is the evidence view, where different line colors represent the types of evidence for the association.
Post-translational modifications
PTM annotation is taken from PTMcode, a resource of known and predicted functional associations between protein post-translational modifications (PTMs). There are 98 PTMs annotated in this protein:
| PTM | Count | |
|---|---|---|
 | Methylation | 55 |
 | Ubiquitination | 24 |
 | Phosphorylation | 19 |
To see the full details, including possible functional associations between the PTMs, please visit the PTMcode annotation page for protein ENSMODG00000021487.
Orthologous groups
Orthology information is taken from eggNOG, a database of orthologous groups of genes. Orthologous groups containing this protein are listed below. This protein is named 9606.ENSP00000300413 in eggNOG.
| OG | Taxonomic class | Description |
|---|---|---|
| LKOG3428 | All organisms (root) | small nuclear ribonucleoprotein D1,U7 snRNA-associated Sm-like protein LSm10,gamma-glutamylcyclotransferase [EC:4.3.2.9] |
| KOG3428 | Eukaryota (superkingdom) | small nuclear ribonucleoprotein D1,U7 snRNA-associated Sm-like protein LSm10,gamma-glutamylcyclotransferase [EC:4.3.2.9] |
| HVPEM | Metazoa (kingdom) | small nuclear ribonucleoprotein D1,gamma-glutamylcyclotransferase [EC:4.3.2.9] |
| 94648 | Chordata (phylum) | small nuclear ribonucleoprotein D1,gamma-glutamylcyclotransferase [EC:4.3.2.9] |
| 5QJDD | Sarcopterygii (superclass) | small nuclear ribonucleoprotein D1 |
| 8YYCW | Mammalia (class) | small nuclear ribonucleoprotein D1 |
| 4RG1N | Euarchontoglires (superorder) | small nuclear ribonucleoprotein D1 |
| 4ZP4F | Primates (order) | small nuclear ribonucleoprotein D1 |
| 98BAX | Haplorrhini (suborder) | small nuclear ribonucleoprotein D1 |
| BVBN7 | Simiiformes (infraorder) | small nuclear ribonucleoprotein D1 |
| 9F0AY | Catarrhini (parvorder) | small nuclear ribonucleoprotein D1 |
| 7JDVD | Opisthokonta (clade) | small nuclear ribonucleoprotein D1,gamma-glutamylcyclotransferase [EC:4.3.2.9],tyrosinase [EC:1.14.18.1] |
| H6J6Q | Bilateria (clade) | small nuclear ribonucleoprotein D1,gamma-glutamylcyclotransferase [EC:4.3.2.9] |
| 9GPN3 | Vertebrata (clade) | small nuclear ribonucleoprotein D1,gamma-glutamylcyclotransferase [EC:4.3.2.9] |
| FWXU4 | Hominoidea (superfamily) | small nuclear ribonucleoprotein D1 |
| 5MXMT | Hominidae (family) | small nuclear ribonucleoprotein D1 |
| 5XV4K | Homininae (subfamily) | small nuclear ribonucleoprotein D1 |
The SMART diagram above represents a summary of the results shown below. Domains with scores less significant than established cutoffs are not shown in the diagram. Features are also not shown when two or more occupy the same piece of sequence; the priority for display is given by SMART > PFAM > PROSPERO repeats > Signal peptide > Transmembrane > Coiled coil > Low complexity. In either case, features not shown in the above diagram are listed in the right side table below, and the reason for their omission is shown in the 'Reason' column.