Domains within Saccharomyces cerevisiae protein YDR059C

Alternative representations: 1 /

Protein length148 aa
Source databaseEnsembl
Identifiers YDR059C
Source gene YDR059C

Domain architecture analysis

Display all proteins with similar:

Domain organisationProteins having all the domains as the query in the same order. Additional domains are allowed.
Domain compositionProteins with the same domain composition have at least one copy of each of the domains of the query.

This domain architecture was probably invented with the emergence of cellular organisms

Predicted functional partners

YDR059C is shown as UBC5 in the network

Click and drag to pan the network, and zoom by using your mouse wheel. Click the protein nodes for additional options.

The network on the left comes from STRING, a database of known and predicted protein interactions. Displayed here is the evidence view, where different line colors represent the types of evidence for the association.

Open the STRING annotation page for UBC5

Protein YDR059C is possibly involved in these pathways, based on its similarity to the listed KEGG orthologous groups:

KEGG pathways

PathwayDescription
map04120Ubiquitin mediated proteolysis
map04141Protein processing in endoplasmic reticulum

KEGG orthologous groups

KONameDescription
K06689UBE2D, UBC4, UBC5ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23]

Post-translational modifications

PTM annotation is taken from PTMcode, a resource of known and predicted functional associations between protein post-translational modifications (PTMs). There are 7 PTMs annotated in this protein:

PTMCount
Ubiquitination3
Acetylation2
Nitrosylation1
Phosphorylation1

To see the full details, including possible functional associations between the PTMs, please visit the PTMcode annotation page for protein EC1118_1D0_3048g.

Orthologous groups

Orthology information is taken from eggNOG, a database of orthologous groups of genes. Orthologous groups containing this protein are listed below. This protein is named 4932.YDR059C in eggNOG.

OGTaxonomic classDescription
LCOG5078All organisms (root)ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23],ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24],ubiquitin-conjugating enzyme E2 I
FQFZPDikarya (subkingdom)ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23]
KOG0417Eukaryota (superkingdom)ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23],ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23],ubiquitin-conjugating enzyme E2 E [EC:2.3.2.23]
BKR4XFungi (kingdom)peroxin-4 [EC:2.3.2.23],ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23]
9T9GEAscomycota (phylum)ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23]
91EBYSaccharomycetales (order)ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23]
7I9T9Opisthokonta (clade)ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23],ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23],peroxin-4 [EC:2.3.2.23]
AT6WPSaccharomycetaceae (family)ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23]

The SMART diagram above represents a summary of the results shown below. Domains with scores less significant than established cutoffs are not shown in the diagram. Features are also not shown when two or more occupy the same piece of sequence; the priority for display is given by SMART > PFAM > PROSPERO repeats > Signal peptide > Transmembrane > Coiled coil > Low complexity. In either case, features not shown in the above diagram are listed in the right side table below, and the reason for their omission is shown in the 'Reason' column.

Confidently predicted domains, repeats, motifs and features:

Outlier homologues and homologues of known structure:

Features NOT shown in the diagram: