The domain within your query sequence starts at position 290 and ends at position 400; the E-value for the RF-1 domain shown below is 2.6e-41.
DEVDVKVDPKDLRVDTFRARGAGGQHVNTTDSAVRLVHIPTGLVVECQQERSQLKNKEIA LRVLRARLYQQIIEKDRCQQQNARKLQVGTRAQSERIRTYNFTQDRVTDHR
RF-1 |
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PFAM accession number: | PF00472 |
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Interpro abstract (IPR000352): | Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [ (PUBMED:8821264) ]. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner [ (PUBMED:2215213) ]: RF-1(gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [ (PUBMED:1408743) ]. |
GO process: | translational termination (GO:0006415) |
GO function: | translation release factor activity (GO:0003747) |
This is a PFAM domain. For full annotation and more information, please see the PFAM entry RF-1