The domain within your query sequence starts at position 1364 and ends at position 1380; the E-value for the ZnF_C2HC domain shown below is 3.44e-4.



zinc finger
SMART accession number:SM00343
Description: -
Interpro abstract (IPR001878):

Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [ (PUBMED:10529348) (PUBMED:15963892) (PUBMED:15718139) (PUBMED:17210253) (PUBMED:12665246) ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few [ (PUBMED:11179890) ]. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target.

This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence:


where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [ (PUBMED:17416621) (PUBMED:17202191) (PUBMED:17029416) ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding [ (PUBMED:15937226) ].

GO function:nucleic acid binding (GO:0003676), zinc ion binding (GO:0008270)
Family alignment:
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There are 212035 ZnF_C2HC domains in 145233 proteins in SMART's nrdb database.

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